LOCUS       NM_001010963            2036 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus zinc finger CCCH-type containing 15 (Zc3h15),
            mRNA.
ACCESSION   NM_001010963 XM_342454
VERSION     NM_001010963.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Perez-Arellano,I., Spinola-Amilibia,M. and Bravo,J.
  TITLE     Human Drg1 is a potassium-dependent GTPase enhanced by Lerepo4
  JOURNAL   FEBS J 280 (15), 3647-3657 (2013)
   PUBMED   23711155
REFERENCE   3  (bases 1 to 2036)
  AUTHORS   Heese,K.
  TITLE     Establishing an in vivo p48ZnF bioluminescence mouse brain imaging
            model
  JOURNAL   Neurosci Lett 542, 97-101 (2013)
   PUBMED   23470633
  REMARK    GeneRIF: p48ZnF' cellular location of action depends on the cell's
            differentiation status: nuclear in proliferating cells and
            cytoplasmic in differentiated neurons.
REFERENCE   4  (bases 1 to 2036)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 2036)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 2036)
  AUTHORS   Heese,K., Nagai,Y. and Sawada,T.
  TITLE     Nerve growth factor (NGF) induces mRNA expression of the new
            transcription factor protein p48ZnF
  JOURNAL   Exp Mol Med 36 (2), 130-134 (2004)
   PUBMED   15150441
  REMARK    GeneRIF: p48ZnF is up-regulated in rat neuronal PC12 cells upon
            stimulation with the neurotrophic factor NGF
REFERENCE   7  (bases 1 to 2036)
  AUTHORS   Gregory,R.C., Lord,K.A., Panek,L.B., Gaines,P., Dillon,S.B. and
            Wojchowski,D.M.
  TITLE     Subtraction cloning and initial characterization of novel
            epo-immediate response genes
  JOURNAL   Cytokine 12 (7), 845-857 (2000)
   PUBMED   10880228
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088438.1.
            
            On Jan 28, 2005 this sequence version replaced XM_342454.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088438.1, AY377983.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..2036
                     /gene="Zc3h15"
                     /note="zinc finger CCCH-type containing 15"
                     /db_xref="GeneID:362154"
                     /db_xref="RGD:1359234"
     exon            1..119
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1325
                     /gene="Zc3h15"
                     /note="brain zinc finger protein; p48ZnF"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 15"
                     /protein_id="NP_001010963.1"
                     /db_xref="GeneID:362154"
                     /db_xref="RGD:1359234"
                     /translation="MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIK
                     AVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKS
                     VVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEE
                     VVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLK
                     KDKKKEEKEDEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMER
                     RKADFKAGKALVISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDL
                     SLYVPRDVEETGITVASLERFSTYASDKDENKLSEASGGLAENGERSDLDEDSGGGGQ
                     ENGSIDAVPVDENLFTGEDLDELEEELNTLDLEE"
     exon            120..221
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            222..333
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            334..486
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            487..578
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            579..761
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            762..908
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1010
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1134
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..2013
                     /gene="Zc3h15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagccatct gcgtcgcaga cggctcggcg cccccgcctc cgcaatgccc cccaagaaac
       61 aggctcaggc cgggggcagc aagaaggcgg agcagaagaa gaaggagaag atcatcgagg
      121 acaaaacttt tggactaaag aataagaagg gagcaaaaca acagaaattt attaaggctg
      181 tcactcatca agtgaaattt ggacaacaga atcctcgtca ggtagcacaa agtgaagctg
      241 aaaagaaatt gaagaaagat gacaagaaga aagagctaca agaactaaat gagttgttca
      301 aaccggtagt tgctgcacaa aaaataagta aaggtgcgga ccccaaatct gtggtgtgcg
      361 cattcttcaa acagggacag tgtactaaag gagataaatg taagttctct catgacctca
      421 ctttggagag aaaatgtgaa aaacgaagtg tttacattga tgcaagagat gaagaacttg
      481 aaaaagatac catggataac tgggatgaga aaaagctgga agaagtagta aacaagaagc
      541 acggtgaggc ggaaaagaaa aaaccaaaaa ctcaaatagt gtgcagacat tttcttgaag
      601 ctattgaaaa taacaagtat ggctggtttt gggtgtgtcc tggaggtggg gacaattgca
      661 tgtatcgcca tgcacttcct cctgggtttg tgctaaagaa agacaaaaag aaagaagaaa
      721 aagaagatga aatatcatta gaagatctaa ttgaaagaga gcgttctgcc ctaggtccaa
      781 atgttaccaa aatcactcta gaatcttttc ttgcatggaa gaaaaggaaa agacaagaaa
      841 agattgataa acttgaacaa gatatggaga ggcggaaagc tgacttcaaa gcagggaaag
      901 cgctggtgat cagtggtcgt gaggtgtttg agtttcgtcc agagctggtc aacgatgacg
      961 acgaggaagc agacgacacc cgttacattc agggaacagg aggtgatgag gttgatgact
     1021 ctgtgggtgt aaatgacata gatctaagcc tctatgtccc aagagatgtg gaagagacag
     1081 ggatcactgt ggccagtctt gaaagattca gcacctatgc gtcagataag gacgagaaca
     1141 aattaagtga agcttctgga ggtctggctg aaaatggtga aagaagtgat ttggatgagg
     1201 acagcggagg gggaggacag gaaaatgggt ccatcgatgc tgttcctgtt gatgaaaacc
     1261 tgttcactgg tgaagatctg gatgaactag aagaagaatt aaacacactt gatttagaag
     1321 aatgacgaca aggaagaaaa ttaggtcggc tcagtacgat caacatgaac tgagattgac
     1381 aacgttaatt gttttgccac ccggaatcaa caggatgttt atttccccgt gatgattctg
     1441 gagggactct gtcctccaaa aggaatactc tccctgcgtc ttctcttctg actctgacta
     1501 cagctcttag taagttcaga gtagttggtg ataaattaaa aatgctcatt acagaagacg
     1561 attgttgttg taactgtcca ctcatgtagg aagtgtaacc gcttttccag cttttgtttt
     1621 ctttgggcat gtgtaatttc caggaacaac aaattcacac ttaaaatact tgtgtttgat
     1681 gcagttttta atgagtggct tcctttcctt tgtatttatg ttttagagac gacctgaaaa
     1741 gtgagcactg tacttgataa aggaaactgc atatgcaggt tcagtattgt acgtggacat
     1801 gagaatggga aactgcatat gcaggttcag tattgtacgt ggacatgaga atgggaaact
     1861 gcatatgcag gttcagtatt gtacgtggac atgagactgg gacttgttca atccaacagg
     1921 gtcagctaca gcgccctgta tgaaagatgt ttgaagttct cccctttttg ccaataaagt
     1981 tgtaaataaa aaccatcata catccaaatc caaaaaaaaa aaaaaaaaaa aaaaaa
//
