LOCUS       NM_001170471            6199 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger CCCH type containing 13 (Zc3h13),
            mRNA.
ACCESSION   NM_001170471 XM_001072035 XM_224295
VERSION     NM_001170471.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6199)
  AUTHORS   Wen,J., Lv,R., Ma,H., Shen,H., He,C., Wang,J., Jiao,F., Liu,H.,
            Yang,P., Tan,L., Lan,F., Shi,Y.G., He,C., Shi,Y. and Diao,J.
  TITLE     Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic
            Stem Cell Self-Renewal
  JOURNAL   Mol Cell 69 (6), 1028-1038 (2018)
   PUBMED   29547716
REFERENCE   2  (bases 1 to 6199)
  AUTHORS   Yue,Y., Liu,J., Cui,X., Cao,J., Luo,G., Zhang,Z., Cheng,T., Gao,M.,
            Shu,X., Ma,H., Wang,F., Wang,X., Shen,B., Wang,Y., Feng,X., He,C.
            and Liu,J.
  TITLE     VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near
            stop codon and associates with alternative polyadenylation
  JOURNAL   Cell Discov 4, 10 (2018)
   PUBMED   29507755
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6199)
  AUTHORS   Horiuchi,K., Kawamura,T., Iwanari,H., Ohashi,R., Naito,M.,
            Kodama,T. and Hamakubo,T.
  TITLE     Identification of Wilms' tumor 1-associating protein complex and
            its role in alternative splicing and the cell cycle
  JOURNAL   J Biol Chem 288 (46), 33292-33302 (2013)
   PUBMED   24100041
REFERENCE   4  (bases 1 to 6199)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC158717.1 and JAXUCZ010000015.1.
            
            On or before Dec 20, 2009 this sequence version replaced
            XM_001072035.1, XM_224295.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.374363.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1137              BC158717.1         1-1137
            1138-1244           JAXUCZ010000015.1  57053493-57053599
            1245-1552           JAXUCZ010000015.1  57059024-57059331
            1553-2194           JAXUCZ010000015.1  57060573-57061214
            2195-2386           JAXUCZ010000015.1  57061659-57061850
            2387-2987           JAXUCZ010000015.1  57064781-57065381
            2988-3091           JAXUCZ010000015.1  57066908-57067011
            3092-4288           JAXUCZ010000015.1  57067297-57068493
            4289-4801           JAXUCZ010000015.1  57068926-57069438
            4802-4954           JAXUCZ010000015.1  57072877-57073029
            4955-5155           JAXUCZ010000015.1  57073944-57074144
            5156-5319           JAXUCZ010000015.1  57076100-57076263
            5320-6199           JAXUCZ010000015.1  57080322-57081201
FEATURES             Location/Qualifiers
     source          1..6199
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q11"
     gene            1..6199
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /note="zinc finger CCCH type containing 13"
                     /db_xref="GeneID:305955"
                     /db_xref="RGD:1307729"
     exon            1..294
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            295..420
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     CDS             304..5490
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 13"
                     /protein_id="NP_001163942.1"
                     /db_xref="GeneID:305955"
                     /db_xref="RGD:1307729"
                     /translation="MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRN
                     WLKTGSCLYGNTCRFIHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDSESQK
                     RNTEESSSPVRKESSRGRHRDKEDIKIVKERTPESEEENVEWETNRDDSDNGDINYDY
                     VHELSLEMKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPLRKSSKSP
                     KRKSSPKASSAGKKERKAAVVASPLLDQQRNSKSNQSKKKGPRTPSPPPPILEDIILG
                     KKYKEKYKVKDKIEEKPRDGKDRGRDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSS
                     QSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPTHCLSSPQRKQSPPRHRSP
                     MREKGRHDHERTSQSHDRRHERREEARGKRDREKDTREERESEHDHRDDREPRDSRDR
                     RDTRDRRELRDSRDMRDSREIRDYSRDTKESRDPRDSRSARDVHDYRDREARDAHARD
                     VRDVRDARDARDVRDVRDVRDARDVRDVRDARDVRDARDVRDVRDVRDVRDTRDARDA
                     RDARDGHRKEDVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRG
                     PELPEKGGRSTRGSQMDSHSSGSNYHDSWETRSSYPERDRYPERDTRDQARDSSFERR
                     HGERDRRDNRERDQRPSSPIRHQGRSEELEREERREERRIDRVDERRDERVRDRDRER
                     ERERERERDREREREREKERERELERERAREREREREKERERERERERDQRDRDHDRE
                     REREREREREKEREREERERERERERERERERERERERERERERERERAREREKERER
                     QREWEDKDKGRDDRREKREDVHVREDRIPRDGHEERKSKKRYRNEGSPSPRQSPKRRR
                     EHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEERKSERKE
                     SSRRYEEQELKEKLSCGDRQREQTESVDGGSRARSAQDLLSHRQAEDRDRDGSDRAHD
                     EKKKAKAPKKPVKKKREEDVGIERGNPETHEDSQVFSPKKGQKKKNIEKKRKRSKGDS
                     DVSDEEAAPQSKKKRGPRTPPLAIKEELIEISTDKEGILEDPLKKEDTAFSDWSDEDV
                     PDRTDGLEAEHTAAAATPGSTPSPMSSLLPPPPPVAAAGTAATALAASAISATTSTTI
                     SSSGATSNINASEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSNRSHR
                     SHTSGRLRSPSNDSAHRSGDDQGGRKRVLHSGSRDREKTKSLELTGERKSRIDQLKRG
                     EPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERER
                     RDPRQREWDREADKEWPRTRDRDRLRERERDRDKRRDLDRERERLVADPMERDRERDR
                     TFETSQLESVKRSEVKLESEHDRDLEGSSRDSVALDKERMDRDLGSAQGFEDVSKAER
                     TESLEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDQQEEEKMPDP
                     LDVIDVDWSGLMPKHRKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQ
                     QLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLV
                     KNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSGQQELC
                     VS"
     exon            421..530
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            531..642
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            643..751
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            752..891
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1046
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1244
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1552
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..2194
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            2195..2386
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            2387..2987
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            2988..3091
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            3092..4288
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            4289..4801
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            4802..4954
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            4955..5155
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            5156..5319
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
     exon            5320..6199
                     /gene="Zc3h13"
                     /gene_synonym="RGD1307729"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttttagatg cttcctatgt agaggcccga tggagttgcg ggtttagcgc gttgctctgc
       61 agcggcctct gtacgtctca tctggtgtcc ggagctccct ggagcttggc gaagatctgg
      121 gcggctccgc tgctctctgt tcccggcgtc cgcccggttg aggagagcgg gcccctggga
      181 gtcgcgcgtg cacgtcttct ccgtcgtcct cccggggcgg ggcgcgggga cagcggagct
      241 gaggcgtccg ggacatcctg aagactgcgc ttactaaggg tgcttagaga ggagtagttc
      301 aaaatgtcaa aaattaggag gaaggtcaca gtggaaaaca ccaagaccat atctgaaagc
      361 acatcccgaa gacctagtgt gtttgagagg cttggaccca gcactggaag cacaacagag
      421 acacagtgcc gtaactggct gaagaccggc agctgcctct atggaaacac atgtaggttc
      481 atacatggcc cttcacctcg tgggaaaggt tacagcagca attacagaag gtcaccggaa
      541 aggcctacag gtgatctcag agaaagaatg aagaataagc gtcaggatgt ggattctgaa
      601 tcccagaaac ggaacacaga ggagtcatcc tcacctgtta ggaaagaatc ttcaagaggg
      661 agacatagag acaaggaaga cataaaaatt gttaaagaga gaactccaga aagcgaagaa
      721 gaaaacgtag aatgggaaac caacagagat gattctgaca atggagatat taattacgat
      781 tatgttcatg agttatcatt ggaaatgaag cgtcagaaaa tacagagaga attaatgaag
      841 ttggaacaag aaaacatgga taaaagagaa gaaattatta ttcaaaagga ggtttcccca
      901 gaagtggtga gatcaaagtt gtctccatca cctctgagaa agtcgagtaa atctccaaag
      961 cggaagtcca gccccaaggc atcttcagct ggcaagaaag agcggaaggc tgctgtggtg
     1021 gcttccccgc tgctggacca gcagagaaat tcaaaaagca accaaagtaa aaagaaaggg
     1081 ccacgcactc ctagtccacc tcctcctata ctagaagata tcattctggg aaaaaaatac
     1141 aaagaaaagt ataaagtgaa agacaagata gaagaaaaac caagagatgg aaaggacaga
     1201 ggacgggatt ttgaaaggca aagagaaaaa cgagacaaac caaggtcttc ctccccggga
     1261 cagcaccatt ctcctctgtc ttctagacat cactcgtcgt cctcacagtc agggtcatct
     1321 attcagagac attctccctc tcctcgccgg aaaagaactc cttccccatc ctaccagagg
     1381 actttaactc catctttacg acgttctgca tctccttatc caacccattg tctgtcttct
     1441 cctcagagaa agcaaagtcc tccaagacat cgctctccaa tgagagagaa agggaggcat
     1501 gatcatgaac ggacttcaca gtcacatgat cggcgtcatg aaaggaggga agaagctcga
     1561 ggcaaaaggg atagagaaaa ggacaccaga gaagagcgag agtctgaaca tgaccacagg
     1621 gatgacagag aaccgcgaga cagtcgggac cggagagaca ctagagaccg cagggaactt
     1681 agagactcca gagacatgcg ggactccaga gagataaggg attatagcag agacaccaag
     1741 gagagccgtg atcccagaga ttcccggtca gctcgggatg tccatgacta cagggaccgt
     1801 gaagctcggg atgctcatgc tcgagatgtt cgggatgtca gggatgctcg agatgctcga
     1861 gatgttcggg atgtccggga tgtcagggat gctcgagatg tccgggatgt tcgggatgct
     1921 cgagatgtcc gggatgcccg ggatgtccgg gatgttcggg atgtccggga tgtccgggac
     1981 accagagatg cccgggatgc ccgggatgct cgagatggtc atcgaaagga ggatgtatac
     2041 caggaagaag cccgtagtta tggcagaaac cacctgagag aagagagttc tagagttgaa
     2101 ctaaggaatg actctagaaa tgagtctcga agtgaaatta gaaatgaccg catgggcaga
     2161 agtaggggga gaggtccaga actgcctgaa aagggaggtc gaagcacaag aggttcccaa
     2221 atggatagcc acagtagtgg cagcaactac catgacagct gggaaactcg aagtagctat
     2281 cctgaaagag acagataccc tgagagagat accagagatc aagcaaggga ttcttccttt
     2341 gagagaaggc atggagaaag agaccgtcgg gataacagag aacgagatca aagaccaagc
     2401 tcacctattc gccatcaggg gaggagtgag gagcttgagc gagaggaaag aagagaggaa
     2461 agacgaatag acagagtgga tgagagacga gatgaaaggg tcagagacag agatagggag
     2521 agagagagag agcgggagag ggagagagat cgggaacggg agcgggagcg ggaaaaggaa
     2581 agagaaagag aactagaaag agagagagct agagagcggg agagagagag agagaaagag
     2641 agggagagag agcgagaaag agaaagagat cagagagatc gtgaccatga tcgagagcga
     2701 gaaagagaga gggagcgaga gagggaaaaa gaacgggagc gagaagagag agagagggag
     2761 agagaaaggg aaagggaacg ggaaagagaa agggaacggg agcgggagag agagcgagaa
     2821 cgtgagcggg agcgagaaag ggccagagaa agagaaaaag aacgagagcg gcaaagagaa
     2881 tgggaggata aagacaaggg acgcgatgac cggagggaga agcgcgagga cgttcatgtt
     2941 cgagaggaca ggatccccag agacggccac gaggagagaa agtccaagaa acgctataga
     3001 aatgaaggga gtcccagccc ccggcagtcc cccaagcgcc ggcgggagca ttctcctgac
     3061 agtgacacct accacagtgg ggatgacaaa aatgaaaagc atagactctt gagccaggtc
     3121 gtacggccac aggaatctcg ttctctcagc ccgtcccacc tcacagaaga caggcagggt
     3181 agatggaaag aggaggagcg taaatcggaa aggaaggaga gttcaaggcg ctatgaagaa
     3241 caagaactca aagagaagct ttcttgtggc gacaggcaaa gggagcagac agaaagcgtg
     3301 gacggcggct cgagagcgcg cagcgcgcaa gacctgctca gccatcgcca ggctgaagac
     3361 cgcgaccgag atgggtctga tcgagcccat gatgaaaaga aaaaagcaaa agctccgaag
     3421 aaacccgtaa agaaaaagag ggaggaggat gttggaatag agaggggcaa ccctgagaca
     3481 cacgaggata gtcaagtgtt ttcaccaaaa aaaggacaga aaaagaaaaa cattgaaaaa
     3541 aagcgtaaaa gatccaaggg ggattctgat gtttctgacg aagaggcagc cccgcagagt
     3601 aagaagaaga ggggtccacg cacaccccct cttgccatca aggaggagct gattgagatt
     3661 tccactgaca aggaaggcat ccttgaggat cccctgaaga aagaagatac cgcctttagt
     3721 gactggtctg atgaggatgt gcctgaccgc acagacggct tggaagctga gcacactgca
     3781 gccgcggcca ctcccgggag caccccttcc cccatgtcgt ctcttctccc tcccccgccc
     3841 cctgtggctg ctgccggtac tgcagccact gctcttgccg cctcagccat ttctgccacc
     3901 acctctacca ccatttcaag ctctggtgcc acctccaata tcaatgccag tgaagactca
     3961 cacagaaaat gccacagggc acgaggggag aaggtagagg tgtctcatgt gaccctggaa
     4021 gatacaccac atcgcaaact ggtggatcaa aagagaagca gcagcctggg aagcaatcgg
     4081 agtcaccgca gccatacctc tggtcgcctg cgctccccat ctaatgattc tgcacatcga
     4141 agtggggacg atcagggtgg tcggaagaga gtgctccaca gtggctccag agatagagaa
     4201 aagacaaaga gcctagagct cacaggagag agaaaatcta ggatcgatca gttaaagcgt
     4261 ggagagccca gtcggagtac ttcttcagat cgccaggatt ccagaagcca cagctccaga
     4321 agaagctctc ctgagtcaga ccgacaggtt cactccaggt ctgggtcatt tgacagcaga
     4381 gaccggcttc aagaacgaga taggtatgag catgacagag agcgtgagag ggagcggaga
     4441 gatcccagac aaagggagtg ggaccgggaa gcagacaaag agtggcctcg gacccgagac
     4501 cgtgatagac ttcgggaacg cgagagagac cgagacaaaa ggagagactt ggacagagag
     4561 agagagagac tggtcgccga ccccatggaa agagacagag aacgagatag aacttttgag
     4621 acgtctcagt tggaatctgt gaagcgaagt gaagtcaaat tggagagtga acacgacaga
     4681 gacctggagg gcagctcccg ggactctgtg gccttggaca aagaaaggat ggacagagac
     4741 ctggggtctg cgcaggggtt tgaggatgtg agtaaagcgg agagaacaga gagtctggaa
     4801 gcaggagatg acgagtccaa gttagatgat gcgcattcgt tagggtctgg tgctggggaa
     4861 ggctatgagc ccatcagtga cgacgagcta gatgaaattc tggcagggga tgcagaaaag
     4921 agagaggacc agcaggaaga ggagaagatg ccagatccat tagatgtgat agatgtggac
     4981 tggtctggac taatgccaaa gcatcggaaa gagccgagag agcccggggc tgcactctta
     5041 aagttcacac ccggagccgt gctactacga gttgggattt ctaaaaagtt ggccggttct
     5101 gagctcttta caaaagttaa agaaacatgt caacaacttc tagagaaacc caaagatgca
     5161 gacagccttt ttgaacatga actaggggct ctcaacatgg ctgctttact tcgaaaagaa
     5221 gagcgggcga gtctccttag tgacctggga ccatgttgta aagcattatg tttcagacgg
     5281 gattctgcaa tccggaagca gcttgtgaag aacgaaaagg gaaccgtgaa gcaggcgtac
     5341 accaacactc cgatggtgga caacgagctg cttcggctga gtcttcggtt actcaagagg
     5401 aagacttcct gccacacccc tgggcaggaa aagactgaag atgggaaatt agccccgtgc
     5461 agtggccagc aggagctgtg tgtgtcctag gcagagattg aggacggccc gtttgctctc
     5521 tcttcacagg agtgcataat ctttctcaaa gttttttgtt ttgagacatt gctaattaca
     5581 gagacagaag agtcaccggc cacatcagat gtgaagaact tcagtcttca gagacaccag
     5641 ttttggttca tttaagattt tacattaatt tttatacagt aattgacact caggcaaaat
     5701 aatgtgaaaa tgtctagatt tagtaatttc gtctgtgtct tcattaaaat tgaagatttt
     5761 aagtaaccag gtcacccctg ctcttccagc ctatgaatac ttcctatgaa ataaaagcac
     5821 tgatttttat tctggatcac cacgcagaac tgaccgtagt cagaaaggtg tgtcgctaga
     5881 ggctgctgca caggctgcag tgccgtgtac agagctctga ggtgcgccgg ccttgcgagt
     5941 gcgcccggag gcagtcttca caaggaaacc ccagtgggtt tgcttttttc ttttgaaaat
     6001 tctaaaataa atgactccat gggatttttt tttacacatg tacattgcta cattatatat
     6061 tggaagtctt tggacttttg agtggggttt aattgttcat tatcagagac tgtgtgctat
     6121 tttattttta ataaatgtac gttccctttt cttgttgtag attttccttg ctctttatta
     6181 atcagactcc agacactga
//
