LOCUS       NM_001191090            2082 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger CCCH type containing 10 (Zc3h10),
            mRNA.
ACCESSION   NM_001191090 XM_001065797
VERSION     NM_001191090.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Treiber,T., Treiber,N., Plessmann,U., Harlander,S., Daiss,J.L.,
            Eichner,N., Lehmann,G., Schall,K., Urlaub,H. and Meister,G.
  TITLE     A Compendium of RNA-Binding Proteins that Regulate MicroRNA
            Biogenesis
  JOURNAL   Mol Cell 66 (2), 270-284 (2017)
   PUBMED   28431233
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 17, 2010 this sequence version replaced XM_001065797.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.21354.1,
                                           SRR22582424.525128.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676786, SAMN16676789
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                JAXUCZ010000007.1  1561998-1562041     c
            45-108              JAXUCZ010000007.1  1561144-1561207     c
            109-2082            JAXUCZ010000007.1  1557948-1559921     c
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2082
                     /gene="Zc3h10"
                     /note="zinc finger CCCH type containing 10"
                     /db_xref="GeneID:685928"
                     /db_xref="RGD:1587846"
     exon            1..44
                     /gene="Zc3h10"
                     /inference="alignment:Splign:2.1.0"
     exon            45..108
                     /gene="Zc3h10"
                     /inference="alignment:Splign:2.1.0"
     exon            109..2082
                     /gene="Zc3h10"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..1468
                     /gene="Zc3h10"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 10"
                     /protein_id="NP_001178019.1"
                     /db_xref="GeneID:685928"
                     /db_xref="RGD:1587846"
                     /translation="MPDRDSYANGTGSSGAGPGGGSSEEASGAGTGSGGATSDAICRD
                     FLRNVCKRGKRCRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSKEDE
                     DGYKKTGELPPRLRQKVAAGLGLSPADLPNGKEEVPICRDFLKGDCQRGTKCKFRHLQ
                     RDFEFEARGGGGTGGGGSTGSAPPGRRHDLYDIYDLPERGFEDHEPGPKRRRGGCCPP
                     DGPHFESYECNLAPLRGVECRLLEEENALLRKRVEELKKQVSNLLATNEVLLEQNAQF
                     RNQAKVMTLSSTAPATEQTLAPTVGTVATFNHGIAQTHTTLSSQALQPRPVSQQELVA
                     PAGAPAAPPTNAAPPAAPPPPPPHLNPEITPLSAALAQTIAQGMAPPPVSMAPVAVSV
                     APVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRITAMPH"
ORIGIN      
        1 agaggaccgg caggcggcag cagcaactac ggcggcggcg gcagaaccca gcagtgatgt
       61 ggaggtggag actcacggga gccccggact tcacctgagc tacctcagtc accaagagtg
      121 gcgagagaag aaacaagacc ctgagctggg gggaaccagg atgcctgacc gggacagcta
      181 tgccaacggc actgggagca gcggtgcagg ccctggaggt ggtagcagtg aggaggccag
      241 tggagcaggg acaggcagtg ggggggccac ctcagatgcc atctgtagag acttcctgag
      301 gaatgtctgc aagcgaggca agcgttgtcg ataccgccac ccagacatga gtgaggtatc
      361 caatttgggg gtaagcaaaa acgaatttat cttctgccat gacttccaaa acaaggagtg
      421 tagccgtccc aactgccgct tcatccatgg ctccaaggag gatgaggatg gctataagaa
      481 aacaggagag ctgcctcctc ggctgaggca gaaagtggca gctgggctgg gtctctcacc
      541 tgctgaccta cccaatggta aggaggaggt ccctatctgc cgtgacttcc tcaaaggtga
      601 ctgtcagaga ggaaccaagt gcaagtttcg tcacctgcaa agagattttg agtttgaggc
      661 tcgaggtgga ggaggcactg gaggtggagg ctcgacaggc tctgctcccc caggacgacg
      721 gcatgatctc tatgacatct atgaccttcc ggaaaggggc tttgaggacc atgaaccggg
      781 ccctaagcgc cggagaggtg gctgctgccc tcctgatggc ccccattttg agtcctatga
      841 atgtaacttg gctccgctcc gtggagtgga gtgcagactg ctcgaggagg agaatgctct
      901 gctcaggaaa cgtgtggaag aactgaagaa gcaggtcagc aacctgctgg ccaccaatga
      961 ggtacttctg gagcagaacg cccaattccg aaatcaggcc aaggtcatga ccctgagctc
     1021 cactgcaccc gcgactgagc agaccctggc ccccaccgtg ggcactgtgg ccacttttaa
     1081 ccacggcatt gcccagactc acactactct gagcagccag gctctacagc ctcggcctgt
     1141 gtcccagcaa gaacttgtgg ctcctgctgg agcaccagct gctcccccaa ctaatgctgc
     1201 acctcctgct gctccaccac ccccacctcc acacctgaac ccagagatca caccactgtc
     1261 cgccgctctg gctcaaacca ttgcccaggg gatggcaccc ccgcctgtgt ccatggcccc
     1321 tgtagctgtg tctgtggccc ctgtggctcc tgtggctgtg tccatggctc agcccttagc
     1381 agggatcaca atgagccaca ctactactcc tatggtgacg taccccattg cctcccagag
     1441 catgcgcatc acagccatgc cacactgaca ggccaaacgg acactccctc cctgtcatag
     1501 cacctgaggg ctgcggtcag gggcccttcc ccacccgcag agcccagccc tcccaggctc
     1561 tgtccagagg accactcaga aactaggaca agagactaca aggaatatac tcggtaggag
     1621 cgtctcctga ggcagggttg tgctgctgtg ttctccccac tcttgagagg gtcgtctcct
     1681 tcaggcctca actcagacag gcttgcacag gcgttgagac tgaagccagc agaaagggct
     1741 aagggactgt gttttctcac aggaatttgg gggggtgtcc ctggtcttat tttcattgtg
     1801 aacagcacag attccagcac tgatatggga gagaaagatt cctcacccag agagagccag
     1861 gaaagatgga gaagtgaaag tcagtggtca ggagcaaaga ccgcacgtga gccttcagat
     1921 ggtttggggc ccaaaaatac tcctgggccc ctggggaggc cgggaccata gtactccaac
     1981 ccagagtagg agaacactca cttacctcgc ttggcctgga aatctgtagg gcagtgccca
     2041 ctactttcca aagaaataaa agaacgttat tttttaacaa aa
//
