LOCUS       NM_001014079            2004 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus zinc finger, C2HC-type containing 1C (Zc2hc1c),
            mRNA.
ACCESSION   NM_001014079 XM_234421
VERSION     NM_001014079.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078967.1.
            
            On Apr 20, 2005 this sequence version replaced XM_234421.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078967.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132263, SAMD00132267
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..2004
                     /gene="Zc2hc1c"
                     /gene_synonym="Fam164c; RGD1307122"
                     /note="zinc finger, C2HC-type containing 1C"
                     /db_xref="GeneID:314321"
                     /db_xref="RGD:1307122"
     exon            1..84
                     /gene="Zc2hc1c"
                     /gene_synonym="Fam164c; RGD1307122"
                     /inference="alignment:Splign:2.1.0"
     exon            85..1414
                     /gene="Zc2hc1c"
                     /gene_synonym="Fam164c; RGD1307122"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..1681
                     /gene="Zc2hc1c"
                     /gene_synonym="Fam164c; RGD1307122"
                     /note="protein FAM164C; family with sequence similarity
                     164, member C"
                     /codon_start=1
                     /product="zinc finger C2HC domain-containing protein 1C"
                     /protein_id="NP_001014101.1"
                     /db_xref="GeneID:314321"
                     /db_xref="RGD:1307122"
                     /translation="MAGLQLAPHLPVGVMFPHNKTEAHGLHSAKHDPYEQSDSPQRSS
                     MGHLRTSFQQKLWSNTELEQEDVISTHPKRNICTKARRHSCPHSAGISQQGSGNNAQG
                     QGKGLFYLSSPTPRYPKANDQDFIPFRKKRVGVDRAYPLKPMVHRKSHSTSETGIDGD
                     QNGYPRLPDSSEFSDSSFGLRSWVNPSLLASPQAEKVMAQLHRTEWTQIQRLEAAGES
                     LQKEIRRKEILLREKLKKTEEGLRRIQREKKQAIFQEDRELQRMVLPRRRVRDGDLDT
                     THNSCLSPELRSEVFSRNRGEDQTCEQAQENSSPLQLSDYEIQRLKRERLMVSNNKIR
                     DRDSGPSAGTFSQPAEDLGDELQASSLSGTPGSSGSSSSTEEQELGKCSHCGRSFLSL
                     RLQRHSTVCGKMQGSKRKVFDSSRARAKGTELEQYLNWRGPATDKAEPPPRKSTWRQK
                     HESFIRTLRHARQVQQVIARGGNPSDLPSILPAENPDYVQCPHCSRHFAPKVAERHIP
                     KCKTIKNRPPPPRRHDS"
     exon            1415..1973
                     /gene="Zc2hc1c"
                     /gene_synonym="Fam164c; RGD1307122"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcggttgg gtttagtcag gtgtggaaga ctaggtcttg gggattttcc ttgagctgga
       61 gcgtctcccc tccgagcgcc taaggcttcg gtccaggcac tgaatggctg gtctccagtt
      121 ggctccacat ctgcctgtgg gcgttatgtt cccacataat aaaacagaag ctcatgggct
      181 ccactccgct aagcacgacc cttacgaaca aagtgactct ccccagcggt cctcgatggg
      241 acacttgagg actagtttcc agcagaagct ttggagcaac acagagctgg aacaagagga
      301 tgtcatctcc acccacccca aaaggaacat ctgcacgaaa gcccggaggc actcctgtcc
      361 ccacagtgca ggaatcagcc agcaaggctc aggaaacaat gcccagggcc aaggaaaggg
      421 tttgttttac ttgtctagcc cgacaccccg gtatcccaaa gcaaatgacc aggacttcat
      481 tccatttagg aagaaacgag ttggcgtgga tcgggcatac ccactgaaac ccatggtcca
      541 ccggaagtca catagtacaa gtgaaacagg cattgacggg gaccagaatg gctacccaag
      601 gctccctgac tcgagcgagt tttcggacag cagctttggg ttaaggagct gggtgaatcc
      661 ctctctcctt gcttccccgc aggcagagaa ggtcatggca cagctccata ggacagagtg
      721 gacacagatc caaaggctag aagctgcagg cgagagttta cagaaggaaa tccgaagaaa
      781 ggagattctc ctacgagaaa agctaaagaa gacagaggag ggtcttcgaa ggattcagag
      841 ggaaaagaaa caggccattt tccaggaaga cagggagcta caaaggatgg tattacctag
      901 gaggcgggtt agagatggtg acctcgacac cacacacaac tcctgcttat ccccagagtt
      961 gaggtccgag gtgttcagta gaaacagggg agaggatcaa acgtgtgaac aggctcagga
     1021 aaactctagt ccactccagc tctctgatta tgaaatccag aggctcaaaa gggaaaggct
     1081 gatggtaagt aacaataaaa tccgagacag agactcagga ccgtcagcag gcacgttctc
     1141 tcaacctgca gaggatctgg gcgatgaact gcaggcatcg agtttgtccg gaacaccagg
     1201 gtcctcaggg tccagctcct ccacagaaga gcaagagttg ggcaaatgca gccactgtgg
     1261 acgctcgttt ctttccctca ggctgcagag acactccacc gtttgtggca agatgcaggg
     1321 ttccaaaaga aaagtgtttg actcctccag ggcccgggcg aagggcacag aactagagca
     1381 gtacttgaac tggagggggc cagccacaga caaggctgag cctcctcctc ggaagagcac
     1441 ctggagacag aagcacgagt cttttatccg taccctccgg catgcacgac aagtccagca
     1501 ggtaatcgcc agaggtggca atccctcaga cctgccttcc atcttgcctg cagaaaaccc
     1561 agactacgtg cagtgtcctc attgcagccg ccactttgct cccaaggtgg ctgaacgcca
     1621 tatacctaag tgtaagacca tcaagaaccg tcctccacct ccaaggaggc atgacagctg
     1681 agcagacagt ggcagacact gcctcactcg ggctcttcgt cccttcagca gaaaaccaga
     1741 gataagtgat gggaagcagg gagaaaaaca gaacttttcc aaaactcagg atctgcctgt
     1801 cgggcaaaac gacccatgtg gaggagagcc actgctgcac ggcagggggc aaatggaagc
     1861 cccatcttct cacaggatca gaagcttggc tgagtgctca tggtcttgcc tgaagaattg
     1921 gtagttgagg accctgggaa gtgaggctgc attaaagctc ttcccgaacc tgaaaaaaaa
     1981 aaaaaaaaaa aaaaaaaaaa aaaa
//
