LOCUS       NM_001107661            1406 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus zinc finger, C2HC-type containing 1A (Zc2hc1a),
            mRNA.
ACCESSION   NM_001107661 XM_001058011 XM_226971
VERSION     NM_001107661.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1406)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473961.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_226971.4, XM_001058011.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168976.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1406
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q23"
     gene            1..1406
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /note="zinc finger, C2HC-type containing 1A"
                     /db_xref="GeneID:310244"
                     /db_xref="RGD:1311970"
     exon            1..88
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..1047
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /note="family with sequence similarity 164, member A"
                     /codon_start=1
                     /product="zinc finger C2HC domain-containing protein 1A"
                     /protein_id="NP_001101131.1"
                     /db_xref="GeneID:310244"
                     /db_xref="RGD:1311970"
                     /translation="MDGLEENGSVVQVGELLPCKICGRTFFPLALKKHGPICQKTATK
                     KRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALK
                     EGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKYSTDSKG
                     KPASRPQYKPSPLKKSNPPASTSSGSSRLPQPSTTSKTIVGVPTGKASSVNSPLGNKP
                     QTLSPSHRALAAPQAGANTKSRNTTPPSLARNSVAGVLTNKRKTFTESYAARPDGDYT
                     SSVNGGNIKGIEGNSSGHLPKFCHECGTKYPVDWAKFCCECGIRRMIL"
     exon            89..165
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            166..282
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            283..424
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            425..573
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            574..673
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            674..773
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            774..881
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1406
                     /gene="Zc2hc1a"
                     /gene_synonym="Fam164a; RGD1311970"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgcggccg ggttgctaca gccagagctg ggcggcggcg ggtgctgcct gaggatcctg
       61 aggcggcgcg ccatggacgg gctagaagaa aatggaagtg ttgtccaggt tggagaattg
      121 ttgccctgca agatttgcgg aagaacattc ttcccattag cactgaaaaa acatggaccc
      181 atttgccaga aaactgccac taaaaagcgg aagacgtttg attccagccg gcagagagcc
      241 gaggggactg atattcccac cgtcaagcct cttaaaccca ggccagaacc accaaagaaa
      301 ccatctaatt ggagaagaaa acacgaggaa ttcatcgcca ccataagagc agcaaaaggc
      361 cttgatcagg cactcaaaga gggtggcaaa cttccgcctc ctcctccacc ttcctacgac
      421 cctgattata ttcagtgtcc gtattgccag aggagattca atgaaaacgc agccgacaga
      481 catataaact tttgtaaaga acaggcagca cgtattagta ataagggcaa atattctact
      541 gattccaaag gaaaaccagc ttcgcggcca cagtataagc catctccgct taaaaaatca
      601 aatccacctg caagtacatc atcaggatct tcccgactac cacaaccgag tactactagc
      661 aaaaccattg taggtgtgcc tacggggaaa gcatcttcag ttaacagtcc tttgggaaac
      721 aaacctcaga ccttatctcc ttctcataga gcactagcag ccccccaggc aggagctaac
      781 accaagtctc gaaataccac acctcctagt ttggcaagaa attctgtggc gggtgtgctt
      841 accaacaaaa gaaagacttt tactgagagc tatgcagcca gaccagatgg agactataca
      901 tcttcagtta atggtggaaa cattaaaggc atcgagggaa attcatctgg acacttacca
      961 aaattctgcc atgagtgtgg gacaaagtac cctgttgact gggcaaagtt ctgctgtgaa
     1021 tgtggcattc gaagaatgat tctgtgaaca gaatcacaga cgctaagggt ccaggttccg
     1081 aatttaatga ttattgctgc tttgacacct atggcacttc ttatagttat gttgtgctaa
     1141 agctatttat agtatccttt tcccttagtc tttggaacac agtcctttgg ctgaataatg
     1201 tgtttatgta tatgtatgta tatatattct ctatataata aatttcattc tttcagcttg
     1261 tgtcattcaa ggaaatactt aagcatatgt taaaaaatag gttgatatga gatcactgtc
     1321 ttaagtattg ctctttggct gtctcgatgc atcagtaaac ttgcacaagc tcccactgta
     1381 gcgatgagcc ctgtaagctt tagggt
//
