LOCUS       NM_213564               2760 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 9 (Zbtb9),
            mRNA.
ACCESSION   NM_213564 XM_006256121 XM_228017
VERSION     NM_213564.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On or before Jul 30, 2021 this sequence version replaced
            XM_006256121.4, NM_213564.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2074137.1,
                                           SRR26360176.1561498.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               JAXUCZ010000020.1  5059316-5059451
            137-2760            JAXUCZ010000020.1  5059696-5062319
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..2760
                     /gene="Zbtb9"
                     /gene_synonym="3930402F13Rik"
                     /note="zinc finger and BTB domain containing 9"
                     /db_xref="GeneID:294289"
                     /db_xref="RGD:1303050"
     exon            1..136
                     /gene="Zbtb9"
                     /gene_synonym="3930402F13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            137..2760
                     /gene="Zbtb9"
                     /gene_synonym="3930402F13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             176..1573
                     /gene="Zbtb9"
                     /gene_synonym="3930402F13Rik"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 9"
                     /protein_id="NP_998729.1"
                     /db_xref="GeneID:294289"
                     /db_xref="RGD:1303050"
                     /translation="MDASTPLPPAPSSPRCNPAPQTIHIDFPHHSSSLLESLNRHRLE
                     GKFCDVSLLVQGRELRAHKAVLAAASPYFHDKLLLGDAPRLTLPNVIEADAFEGLLQL
                     IYSGSLHLPLDALPAHLLVASGLQMWQVVDRCSEILRELETSSGISSGGGASSLTLLS
                     TTSAGGWCIRSSPFQNPGRSSASTENSAAPESPSGGEGGELEGMLQIQVKVEEEEEQR
                     SAAPPFQTPQPERVSGAVSQACGSHPLPTSTLPSKPSEDENSTLDPPAPPVQTSQILY
                     VNQENVECKEETSGGRTLSGGAKEKTKVLPGENSEENGELRYLLSSGGGETSGAGDPS
                     WKPVDLHGNEILSGGGGPGGTGQAMHGPVKLGGTPPADGKCFACLCGKRFAVKPKRDR
                     HIMLTFSLRPFGCGICNKRFKLKHHLTEHMKTHARALHACPHCGRRFRVQAFFLRHRD
                     LCKGQGWPTYHWTYK"
ORIGIN      
        1 cggcggaact gcggcagctt ccggccggcc aggcgcagtg gatgcgagga gctccgacgc
       61 ggtcgtgcgt gcggtggggg cgtgtcggtg ggaagtcgtg gggccggagc tcgcggagcc
      121 ggcctgtccg agcaagtctt catccacggg ttttatttct ccctccgagg tagccatgga
      181 tgcttcgact cctttgcctc ccgcaccctc ttctccgagg tgtaacccag ccccacagac
      241 aatccacatt gatttccctc atcatagctc ttcgctgctg gaatccctga accgccatag
      301 gctggaggga aagttctgtg atgtatccct cctggttcag ggcagggaac tgagggctca
      361 caaagcagtg ttggctgctg cctctcctta cttccatgac aagctgctat tgggggatgc
      421 gccccgactc actttaccga atgtcatcga ggcagatgcg ttcgagggac tgcttcagct
      481 catctattca ggaagcctcc acctgccatt ggatgctctt cctgcccatc tcctcgtggc
      541 cagtggcctt cagatgtggc aggtagtaga tcggtgctca gagattcttc gagagctaga
      601 aacgtccagt ggaatttcat ctggtggagg agcctccagc ctcacacttc tttccacaac
      661 atctgcagga ggctggtgca ttcgctcttc ccctttccag aacccagggc ggtcctccgc
      721 ttccacagag aattctgctg cccctgagag ccccagtgga ggggaggggg gtgaactaga
      781 aggaatgtta cagattcagg tcaaagtaga ggaggaagag gagcagaggt cagcagcccc
      841 accctttcag acccctcagc ctgagagagt gtcaggagcg gtttcccagg cttgcggatc
      901 ccacccgttg cctacatcga ctcttcccag caaaccttca gaggatgaga actcaacact
      961 tgatcctcct gcccctcccg tacaaacttc ccaaatctta tacgttaacc aggaaaacgt
     1021 cgagtgtaag gaggagacat caggaggcag gactctgtct ggaggagcaa aggaaaagac
     1081 caaagtactg cctggagaga actctgagga aaatggggag ctaagatact tgctgtcctc
     1141 aggaggaggg gagacgtctg gggcaggaga cccatcctgg aaaccagtgg atctccatgg
     1201 gaatgaaatc ttgtcagggg gcggaggacc cggaggaaca gggcaggcta tgcacgggcc
     1261 tgtgaagcta ggagggacac cccctgcaga tggaaagtgc tttgcttgct tgtgtggaaa
     1321 acggtttgca gtcaagccga aacgagaccg acacatcatg ttgaccttca gccttcgtcc
     1381 cttcggctgc ggcatctgta ataaacgctt caagctgaag catcatctga cagagcacat
     1441 gaagacccac gccagagctc tgcacgcgtg tccccattgt ggccgccggt tccgggtcca
     1501 ggctttcttc cttcgacacc gggacttatg caagggccag ggctggccca cttaccactg
     1561 gacttacaaa tgactaccga tgctctgtag tgatttctag gacaagatag ccactgctgc
     1621 tgacggactt accttccacc acctcagtcc tggatcgtgt ggtccttcca agagattata
     1681 tatgtcatgt tgtgaacccc ttactcttgg ggatgggcct caccctggta tatttggaag
     1741 tcctgtagga aggtcatgct tctgatcact caaccggaat ggcccttttt gtattgatag
     1801 ccagtgaagg aactgctgac ctcaggttat attagcaaga gaagagatgg agcaaaatga
     1861 cccagtaact ctatcctcat cttcatgagg aggtgaggga gctggtctcc aactaggaaa
     1921 acatttgatt cagagctcaa gtaattgtca gactcagctc tgagcggcct ctgcctcact
     1981 gtcaacggta tcccgactct gtactttctg tcatttcttt ccagaagctt tttaaagttg
     2041 tacttttctt ttctcaccag gagacacctt tcccaaatat ccttttaaaa atgactggag
     2101 aggtggctcg ggcactgact gctcttccag aggtcctgag ttcaaatccc agtagccgca
     2161 tggtggctca caaccatctg taatgggatc tgacgccctc ttctggcctg caggcgtaca
     2221 tgcagacaga gcattcatac attaaaaaaa aaaagtactt gaacatgaag caagtgtcct
     2281 gcacacattt aatcacagca catgggaggc agaggcaggt ggatctcttc aagttcaagg
     2341 ccagccaggg ctgcgctcgg cgagacccta tcttgagggg gataaatagt actcgagcac
     2401 tttagcaaac tgagcatttc acaggttact ctgaaagccc atcgcagagg gtcctccctc
     2461 agaggccttc accttgtctt tcactaccac taatcacaat gacagatgtg acccaggaac
     2521 tcaagaggtg gcagctggcc tacagcgctc ccagggtggc atttccccca cttagaggat
     2581 ctcagggttg aacccacaca tggtgaggat ctgcagagga gccacggtgg gaccatgctg
     2641 ctctcttttc caccccaccg acatcagtag aaacaacacc tttgtagagg tagaggggta
     2701 gatagaatgg aggtgaaggg gaatttaaat tataataaac tgccccgcaa tctaaactga
//
