LOCUS       NM_001399489            1290 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 8 opposite
            strand (Zbtb8os), transcript variant 1, mRNA.
ACCESSION   NM_001399489 XM_003750036
VERSION     NM_001399489.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Popow,J., Jurkin,J., Schleiffer,A. and Martinez,J.
  TITLE     Analysis of orthologous groups reveals archease and DDX1 as tRNA
            splicing factors
  JOURNAL   Nature 511 (7507), 104-107 (2014)
   PUBMED   24870230
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On Jan 10, 2022 this sequence version replaced XM_003750036.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF110183.1, FM060192.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               JAXUCZ010000005.1  146960206-146960376
            172-196             JAXUCZ010000005.1  146964583-146964607
            197-318             JAXUCZ010000005.1  146965580-146965701
            319-401             JAXUCZ010000005.1  146965836-146965918
            402-454             JAXUCZ010000005.1  146967646-146967698
            455-491             JAXUCZ010000005.1  146968865-146968901
            492-1290            JAXUCZ010000005.1  146970587-146971385
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1290
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /note="zinc finger and BTB domain containing 8 opposite
                     strand"
                     /db_xref="GeneID:297885"
                     /db_xref="RGD:1562249"
     exon            1..171
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..578
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger and BTB domain containing 8 opposite strand,
                     pseudogene 1"
                     /codon_start=1
                     /product="protein archease isoform 1"
                     /protein_id="NP_001386418.1"
                     /db_xref="GeneID:297885"
                     /db_xref="RGD:1562249"
                     /translation="MAQEEEDVRDYNLTEEQKAIKNKYPPVNRKYEYLDHTADVQLHA
                     WGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYRFSA
                     DEYFIPREVKVLNIDQKNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPE
                     VFVIIDI"
     exon            172..196
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            197..318
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            319..401
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            402..454
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            455..491
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            492..1290
                     /gene="Zbtb8os"
                     /gene_synonym="RGD1562249; Zbtb8os-ps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagagcgga agttatggcg cagggccgaa gtctggctga tgaagggcgg aagtagagtt
       61 ccaaatctgc aatcatggct caagaagagg aagatgttag agattacaat ttgacggagg
      121 agcagaaggc gatcaagaac aagtatcctc cagtcaatcg aaagtatgaa tatttggatc
      181 atacagctga tgtccagtta catgcatggg gagacaccct ggaggaagca tttgaacagt
      241 gtgccatggc catgtttggt tacatgacag acaccgggac tgtggagccc ctccaaacag
      301 tggaagtgga aacccaagga gacgacttgc agtctctgct gtttcacttt ttggacgagt
      361 ggctttacag gttcagtgcc gatgagtact tcataccccg ggaagtgaaa gtacttaata
      421 ttgaccaaaa aaatttcaag ttacgatcca ttgggtgggg agaagaattt tcactgtcta
      481 agcaccctca gggaaccgag gtcaaagcaa taacatactc agcaatgcaa gtctacaatg
      541 aagagaagcc agaagtgttc gtgatcatcg acatttaaga taccaaaaaa aaaaggaaag
      601 actcttgtga agaactgatt cgttttcttc ctttagagag gatatgatga ttcattttct
      661 atagtgtctt tgctaaatga aaatgcagaa ctgggaattt aaagggtgat ttttggaaat
      721 ggaaaaccag tgtgtagcct tggtctgtga ttcctagagg atatattctt cggttctgag
      781 gagcagtcgt gcacttggtc catgagcaat agccgcggcc gccttaagtc ctccactgca
      841 atgaaagcgc tccagcgtgg tctctctgaa gggactgccc acgggtgtaa gcagccctgt
      901 gcctgtgacc tcaacactca ggatcctgag ttcaaggcca tctttggctg tagaatgagt
      961 tcagagctag cctgggcaac tgaacatggt cctgtctcca aaaagtcaac tggagagcaa
     1021 agagcatgct caccacgtgg gctgaggtca tggcttacgt tgctagggaa cagagccatc
     1081 ctctgctcta gctggttctg agcagagccc tctagaagac ttagaagact cctgattttt
     1141 tctctcttct ttttaaggag caatgatact taatattttc ttagaataaa tatctgacat
     1201 tgtgccttac atatagacct ttctgacatg taattttatt ttgctttttt tgtttgtttg
     1261 tttttcaaga taaagtttct ctcagtataa
//
