LOCUS       NM_001399150            1914 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 8a
            (Zbtb8a), transcript variant 1, mRNA.
ACCESSION   NM_001399150 XM_006238931
VERSION     NM_001399150.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006238931.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161892.1, SRR22582419.1059031.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676787 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000005.1  147005408-147005545 c
            139-226             JAXUCZ010000005.1  146996288-146996375 c
            227-1087            JAXUCZ010000005.1  146987506-146988366 c
            1088-1257           JAXUCZ010000005.1  146985808-146985977 c
            1258-1914           JAXUCZ010000005.1  146977531-146978187 c
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1914
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /note="zinc finger and BTB domain containing 8a"
                     /db_xref="GeneID:313049"
                     /db_xref="RGD:1308756"
     exon            1..138
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /inference="alignment:Splign:2.1.0"
     exon            139..226
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /inference="alignment:Splign:2.1.0"
     exon            227..1087
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..1590
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger and BTB domain-containing protein 8A; zinc finger
                     and BTB domain containing 8"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 8A
                     isoform 1"
                     /protein_id="NP_001386079.1"
                     /db_xref="GeneID:313049"
                     /db_xref="RGD:1308756"
                     /translation="MEISSHQSHLLEQLNEQRRQDVFCDCSILVEGKVFKAHRNVLFA
                     SSGYFKMLLSQNSKETSQPTTATFQTFSPDTFTVILDFVYSGKLSLTGQNVIEVMSAA
                     SFLQMTDVISVCKTFIKSSLDISEKEKDRYFSLSDKDTGSNGVERPSVYSSSWQEDGG
                     SPRSHLSPDQGPAIVSGKPWNKYSYHPASQRSPQPPLAKHEQRKDPIKKTKHLRLPQP
                     SEVVHFKSGKGDARTSDSGHHVSQSEEQVQVDAEVDPVSAGYPYSQGPEVASRSFPDN
                     LPRLRFKCPYCTHVVKRKADLKRHLRCHTGERPYPCQACGKRFSRLDHLSSHFRTIHQ
                     ACKLICRKCKRHVTDLTGQVVQEGTRRYRLCNECLTEVGMDSLPADLETEQHRVSPAD
                     GDKDCRWHLSEEENRSYVEIVEDGSADLVIQQVDDSEEEEEKEIKPNIR"
     exon            1088..1257
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1914
                     /gene="Zbtb8a"
                     /gene_synonym="Zbtb8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttttgtttc tctcacgttg gggctacttg ttttagggcg caaagcctcg gctttggaac
       61 agggtgcttc ccctaccagg aaccgggaat cgctccgcag cgcgcgcgag cgagcaagcg
      121 agcagccaga gccccgcgac actgtgctgt tcgtgctgac ttggatccct tcctctttgc
      181 cctgcaacag tcttaaggtt tcaagagtag catcggacct ttccaggtcc tctccgctac
      241 ccacgtgagt ccttccccgg caaaatggag atctcctcgc accagtccca cctcctggag
      301 caactgaatg agcagcgcag gcaagacgtg ttttgtgact gcagtattct agtcgaaggc
      361 aaggtcttca aggcgcatcg gaatgtattg ttcgcaagca gtggctactt taaaatgctg
      421 ctttctcaga actccaagga gacaagtcag ccaaccacag ccacgtttca gaccttctcc
      481 cccgacacct tcacggtcat cctggacttc gtctattccg gcaaactctc tcttactgga
      541 cagaatgtga tagaagtgat gtctgccgcg agcttccttc agatgactga cgtcatcagc
      601 gtgtgcaaga ctttcattaa gtcctccttg gatattagtg agaaggagaa agatcgctac
      661 ttcagcctct cggataagga caccggctct aatggagtag agcgtccctc tgtctatagc
      721 agcagctggc aggaagatgg cgggtctccc cgctctcacc tgagcccaga ccaaggacca
      781 gccatagtga gtggaaagcc atggaacaag tacagttacc acccagcctc ccagaggagt
      841 cctcagccac cattggccaa gcatgagcaa aggaaggacc ccattaagaa gaccaagcac
      901 ttgagattgc cacagccatc tgaagttgtt catttcaagt cgggcaaagg agatgctcgg
      961 acatccgatt ccggccacca tgtttcccag tctgaagagc aggtccaggt ggatgctgaa
     1021 gtggatcctg tttctgctgg ctacccgtac agccaagggc ctgaggtcgc ctccaggagc
     1081 tttccagaca atctgcccag gctacggttc aagtgcccat actgcacaca tgtggtaaag
     1141 cggaaggcgg acctcaagcg ccacctgcgc tgccacacag gagagaggcc ctacccgtgc
     1201 caggcctgtg ggaaacgctt cagcaggcta gaccatctga gcagccactt ccgcacgatt
     1261 caccaggcat gcaagctcat ctgcaggaaa tgcaaacgcc acgtgactga cctcacaggg
     1321 caagtggtgc aggaaggaac caggcgctac agactgtgta acgagtgcct cacggaagtg
     1381 ggcatggaca gcctccctgc tgacctggaa acggagcagc accgcgtgtc ccccgccgat
     1441 ggtgataagg attgccggtg gcatctgagc gaagaagaga acaggtccta tgtggagatt
     1501 gtagaggacg gctctgccga tctggtcata cagcaggttg acgacagtga ggaagaagaa
     1561 gagaaagaaa taaaacccaa cattaggtag cctgaagtgc gacctgtcag agctggtgtg
     1621 cctgcagtta cacaggcatc gtgtgtctct ccgcgggcag agctcggtta atgggtttct
     1681 cctgtgactt agaagcaacc ggatgtaact tgcatgcttt ctgaataggc cactgtaccc
     1741 atgctgaact tcgttgctgc actggaaaga ccttgcttgt gttggcatga tggatgatca
     1801 cctacccttt ctcttattac agataccact ttctttaaat attgggggaa aaaaatctat
     1861 ttagcaaact tttttgacta aaatatttta aataaatcta tcacaaaact ttaa
//
