LOCUS       XM_006244168            5263 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and BTB domain containing
            47 (Zbtb47), transcript variant X1, mRNA.
ACCESSION   XM_006244168
VERSION     XM_006244168.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244168.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244168.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5263
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5263
                     /gene="Zbtb47"
                     /note="zinc finger and BTB domain containing 47; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 29 ESTs, 3 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 62 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316087"
                     /db_xref="RGD:1562434"
     CDS             469..2817
                     /gene="Zbtb47"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 47
                     isoform X1"
                     /protein_id="XP_006244230.2"
                     /db_xref="GeneID:316087"
                     /db_xref="RGD:1562434"
                     /translation="MERPGPGPRGQRDPAGPCELPAPRHHGTQGPACPPAYPPTCERL
                     LSERTAQWDPLLVEKTTDSPAAEFSLVEDVALHFACLMGRLNEQRLFQPDLCDVDLVL
                     VPQHSVFPAHKGVLAAYSQFFHSLFTQNKQLQRVELSLEALAPSGLQQILNFIYTSKL
                     LVNAANVHEVLSAASLLQMADIAASCQELLDARSLAPSGPVALAQPAASCAPVPPPPY
                     YCDIKQEADTPGLPKIYAREGPDPYSVRVEDGAGAAGDVGSAAAGPAQTLFKEEKEGT
                     PEEAEAPGGSLCKLESGEGLEPELDASGTYGHQEQSQIIVEVNLNNQTLHVSTGPEGK
                     PGPGANPATVVLGQEDRMQGHSEEEEEEEGGGSGGGEEEEEEEEEEGGSQGEEEEEEE
                     GPSDREDEDEEDGPSEQDAESSEEERVAEGRQDPAGPAGCQGSQADPPPHSRMSTRSR
                     GQNSRRRATPEPEEAGGRGGKRPKASGAVAAPQAADGLGAKVKLEEKQQHPCQKCPRV
                     FNNRWYLEKHMNVTHSRMQICGQCGKRFLLESELQLHRQTDCERNIQCMTCGKAFKKL
                     WSLHEHNKIVHGYAEKKFSCEICEKKFHTMAHVRKHMVAHTKDMPFTCETCGKSFKRS
                     MSLKVHSLQHSGEKPFRCENCNERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQY
                     FDEHMKTHTGEKPYICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLK
                     AHKEKCFRVSHPLPGDPASLPATHLQPTAPLFPTAPPRLDTN"
ORIGIN      
        1 cgcgctcagc tcagcgacct cacgcctacc ctggccccgc ccctgcagag cagcgggagg
       61 acacccgggt tagactcccg gacgaacttc ccagcagaga agggttgaga ggggcttggc
      121 gcgggagggt ggggttgcac ggtccaaacg ctctcacgtc accagccggg tcggtccggg
      181 gaccccgagg ctctcccgag ggcagctgca tcgtgacggc gcgtgtccgc gcccccagcc
      241 aacacgctgg gcggcctggc cctttaagcg tccagacggc ggccccagct gacgcgcggg
      301 ctccaatcgg cgccccgcgc cccccgcccg ccgcgcccga ggctcccggg ccgcagctgc
      361 tcggccggga ctcgtcgcgg ccctgcgcct ccgcccgccc gtccggccgc gcccccgggg
      421 ccatggtcgc ggggccctgc gcaggggctg cccccagcgc ggcgcttcat ggagcggccg
      481 gggcccggcc ctcgggggca gcgcgatcct gcggggccct gtgagctccc agcgccgcgg
      541 caccatggta cgcagggccc tgcctgtccc cccgcttatc cgcccacctg cgagcgcctc
      601 ctttcggagc gcacggccca gtgggacccg ttgctggttg agaagaccac agactccccg
      661 gcggcagagt tctcgctggt ggaggacgtg gccctgcact tcgcctgctt gatgggccgt
      721 ctcaatgagc agcgcctctt ccagccagac ctgtgcgatg tggacctagt gctggtgcct
      781 cagcatagcg tgttccctgc acacaagggt gtgctggccg cctacagcca gttcttccac
      841 tcgctcttca ctcagaacaa gcaactgcag cgggtcgagc tgtccctgga ggcgctggcg
      901 cccagcggcc tgcagcagat cctgaacttc atctacacgt ccaaactgct ggtgaacgcg
      961 gccaacgtgc acgaggtgct cagcgcggcc tcgctgctgc agatggctga cattgccgcc
     1021 tcctgccagg agctgctgga cgctcggtcc ctggcgccct cgggccccgt ggccctggcc
     1081 cagccagccg ccagctgtgc cccggtgcct ccaccaccct actactgtga catcaagcag
     1141 gaggcagaca ccccaggcct ccccaagatc tacgcccgtg agggccctga cccgtactct
     1201 gtgcgtgtgg aggatggagc gggggcagct ggagatgtgg gctctgccgc tgcggggccg
     1261 gcacagacgc tcttcaagga ggagaaggaa gggacgcctg aagaggccga ggccccggga
     1321 ggtagcctgt gcaaactgga gagtggagag gggctggagc cagaactgga tgcctcaggc
     1381 acctatgggc accaggagca gtcacagatc attgtggagg tgaaccttaa taaccaaaca
     1441 ctgcatgtgt ccaccgggcc tgagggcaaa ccaggccccg gggccaaccc agccactgtg
     1501 gtgctgggcc aggaggaccg gatgcaggga cactcggaag aagaggagga ggaggaagga
     1561 ggagggagtg gaggaggtga ggaagaggaa gaagaggagg aggaagaggg aggcagccag
     1621 ggagaggagg aagaggagga ggaagggccc agcgaccggg aggacgaaga tgaagaggat
     1681 gggcccagtg agcaggatgc ggagagttct gaggaggaga gggtggccga gggcaggcag
     1741 gaccctgcag gtcccgctgg gtgtcagggc agccaggcgg accctccacc gcacagccgg
     1801 atgtccacgc ggtcccgggg acagaactcc cggcgcagag ccacccccga gccagaggag
     1861 gctggaggta gaggtgggaa gaggcccaag gcgtctggag ctgttgcagc accccaggca
     1921 gctgacgggc tgggggccaa ggtgaagctg gaggagaaac agcagcatcc gtgtcagaag
     1981 tgccctcggg tcttcaacaa ccgctggtac ctagagaagc atatgaacgt gacccacagc
     2041 cgcatgcaga tctgtggcca gtgtgggaag cgcttcctgc tggagagcga gctgcagctg
     2101 cacaggcaga ccgactgtga acgcaacatt cagtgcatga cgtgtggcaa agccttcaag
     2161 aagctgtggt ctcttcacga acacaacaag atagtgcacg gctacgcgga gaagaagttc
     2221 tcctgtgaga tctgcgagaa gaagtttcac accatggcgc atgtgcgcaa gcacatggtt
     2281 gcccacacca aggacatgcc cttcacctgc gagacctgtg ggaagtcctt caagcgcagt
     2341 atgtcgctga aggtccattc gctgcagcac tcgggggaga agcctttccg ctgtgagaac
     2401 tgcaatgagc gcttccagta caagtaccag ctgcggtccc acatgagcat ccacattggc
     2461 cacaagcagt tcatgtgtca gtggtgtggc aaggacttca acatgaagca gtactttgat
     2521 gagcacatga agacacatac aggggagaag ccttatatct gtgagatctg tggcaagagt
     2581 ttcaccagcc gccccaatat gaaacggcac cgacgcacac acacaggaga gaagccatac
     2641 ccgtgcgacg tgtgtggcca gcgcttccgc ttctccaaca tgctgaaggc acacaaagaa
     2701 aagtgcttcc gtgtcagcca cccactgcct ggtgaccctg cctccctgcc cgccacgcac
     2761 ctgcagccca cagccccgct cttccccaca gcacctccca ggctggacac taactgaccc
     2821 ccagcacaga ccctcctggc cagggccagc agacacagac taggggctgg actgcagctg
     2881 gatggccctg gccctgggtc ctggtgcagc ttcttggaga ttttactcct tgtcttaggg
     2941 aagaaaggaa cagagaggga ctggtcggca gcacccctcc aggtgagggg tgctggaggc
     3001 aacagacaca agggcaggag gagctctggg ctgcgggcat ggctaagagc caggcagggc
     3061 ctgggtcagt ttcacctgcc cgtccctggc ttccctgtgc ccctaactga ctccttagga
     3121 ggggagggtt tggggaggat tcaagtgcat ccctgttaaa gggagttgtg aagcccagga
     3181 gtcctgcgca cgcccacgga gacgtggcag gacatcgagt gtggctgggc aggggagtgt
     3241 gaaggctgcc tctctgcgag aggcagagtc gggcaggtgg gggctggccc ccatgggttt
     3301 cctttctcac atccctacca ggcaggctca ggaatcccca gcctgcactg tactttttaa
     3361 agggccccag atcctggaga gagtgtctgg gtgctggaga ccaagactcc agaggggagg
     3421 gaacctgatt cacaggcccc agctcctagg gttcctgcag gagaatgaga tcccagggag
     3481 gggccccaaa ggagcctcag gcaagtagtt cagggtttca tggtgctatc tgtggggcag
     3541 gggacaggga gccatctgca gggcactcct gtcctttccc agcctgcctg gttggactgc
     3601 cccaccagga gacacatgta tctatgtctg ctccccaaag cccacatgag gcctcctctc
     3661 ctctcggggc caggccacta ccgccactcg ctggaccctg gtgcctcttg cattgtgcag
     3721 agcctggggc gccatggcac agccagggag agaagctggc acgggggcag ggagctcagc
     3781 cagtgcccgg tgtttgccct tggggggcag gcagtagtag ttcacccctc tctgttgtca
     3841 tttaatgtcc ttgttcctgc gtttaatggg aggaaggttc cattcgctcg tttcctggtt
     3901 ttgatctccc actgtttata agcttctgtt tgttacactc tgcaccttac tccctccccg
     3961 ccactccctg ccactcccag catggccacg ctgggaagag gcctgtgccc aatggggctg
     4021 gcagagggtg ctgaacccct tgacctcctc agaggctgat ggagctggta cagtgggctg
     4081 gggacatttt aatcatcaat aaacgaagca ctttattctg tacaggtgtg ggcaggccca
     4141 aggcgctcgg cggagttggc tgtcttctgg gcgaggaggc actgaacgag cagttatccc
     4201 tggataggca ccctttctta gcctgaggag ccaggctgca agtgtgccct cagcccctcc
     4261 cccgtgtcca ctggggagac cctgtcccat ttgcctccac actcctgccc cactgcccaa
     4321 ggttgggctt caagctcctc cagtgtagtt cttcctccag cggtaccctt aacctctggg
     4381 cttccatgat gtcctcaggg acccttcctg ctatttctaa cctctggccc cagtgcctgg
     4441 cagctctcca gagctggcta acattttcca aaaaataata ataaaagaaa aggaatgaaa
     4501 gagttgacca actcaagggg tcaccaaccc ttatccctac tggccttggt gaccttcatg
     4561 ggtccagaag ccctggccat tcaatagaca gcaatctgaa gaacagaggc tgggaatgaa
     4621 accctgtccc agtagctggg tttccagaac cttcacaaac ccttccccag gggccagaca
     4681 ggggttctgg gcactggccg gcatggggca cagccctctc tctctgaggc ccctgcatgc
     4741 ctggtgctat actccttgcc ctgcccacaa ggattgcagt cccttattgc cagatgcaat
     4801 aaccccccat ccccatgcag cggaattggg gttctcatct ccccagcttt tacacctaac
     4861 ttttaaagag atggtcaatt cccccaacgt tagcatgagg ggactggaac atggtggcaa
     4921 ctttccaggc ccaaggcaca cattgccttt ggggaggctt ggctgagatc tcctgcccag
     4981 ctagaccaag tctagccctg ggcctgctcc tctgaaccga tgtgggctgc tctggtcttg
     5041 gagcagttgg cagggagttc ccatgaagtc atagagggcc tggagcccag ggatgaccag
     5101 ctccacgtcc cctcacgggt ctgggtgatt acaggaagac caggcccaag tgtgtggagc
     5161 ttaactgcct gcctgtgtgt gtgacacgcc catggtccca gggtgggggc agtagacatt
     5221 tgatcaagat gggtgatgga gaataaactc agttctgccc ctg
//
