LOCUS       NM_001191871            4238 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 40
            (Zbtb40), mRNA.
ACCESSION   NM_001191871 XM_342953
VERSION     NM_001191871.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4238)
  AUTHORS   Matsuoka,S., Ballif,B.A., Smogorzewska,A., McDonald,E.R. 3rd,
            Hurov,K.E., Luo,J., Bakalarski,C.E., Zhao,Z., Solimini,N.,
            Lerenthal,Y., Shiloh,Y., Gygi,S.P. and Elledge,S.J.
  TITLE     ATM and ATR substrate analysis reveals extensive protein networks
            responsive to DNA damage
  JOURNAL   Science 316 (5828), 1160-1166 (2007)
   PUBMED   17525332
REFERENCE   2  (bases 1 to 4238)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   3  (bases 1 to 4238)
  AUTHORS   Beausoleil,S.A., Jedrychowski,M., Schwartz,D., Elias,J.E.,
            Villen,J., Li,J., Cohn,M.A., Cantley,L.C. and Gygi,S.P.
  TITLE     Large-scale characterization of HeLa cell nuclear phosphoproteins
  JOURNAL   Proc Natl Acad Sci U S A 101 (33), 12130-12135 (2004)
   PUBMED   15302935
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 17, 2010 this sequence version replaced XM_342953.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-151               JAXUCZ010000005.1  154567023-154567173 c
            152-259             JAXUCZ010000005.1  154555959-154556066 c
            260-1008            JAXUCZ010000005.1  154537110-154537858 c
            1009-1142           JAXUCZ010000005.1  154536331-154536464 c
            1143-1299           JAXUCZ010000005.1  154527026-154527182 c
            1300-1442           JAXUCZ010000005.1  154526335-154526477 c
            1443-1635           JAXUCZ010000005.1  154520544-154520736 c
            1636-1716           JAXUCZ010000005.1  154520237-154520317 c
            1717-1853           JAXUCZ010000005.1  154518824-154518960 c
            1854-2055           JAXUCZ010000005.1  154517866-154518067 c
            2056-2189           JAXUCZ010000005.1  154517219-154517352 c
            2190-2358           JAXUCZ010000005.1  154515400-154515568 c
            2359-2817           JAXUCZ010000005.1  154514633-154515091 c
            2818-3024           JAXUCZ010000005.1  154513780-154513986 c
            3025-3189           JAXUCZ010000005.1  154510949-154511113 c
            3190-3407           JAXUCZ010000005.1  154509221-154509438 c
            3408-3570           JAXUCZ010000005.1  154508168-154508330 c
            3571-3657           JAXUCZ010000005.1  154507481-154507567 c
            3658-3884           JAXUCZ010000005.1  154505013-154505239 c
            3885-4238           JAXUCZ010000005.1  154503128-154503481 c
FEATURES             Location/Qualifiers
     source          1..4238
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..4238
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /note="zinc finger and BTB domain containing 40"
                     /db_xref="GeneID:362635"
                     /db_xref="RGD:1309866"
     exon            1..151
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            152..259
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            260..1008
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     CDS             312..4079
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein
                     40"
                     /protein_id="NP_001178800.1"
                     /db_xref="GeneID:362635"
                     /db_xref="RGD:1309866"
                     /translation="MELPNYSQQLLLQLYALCKEQRFCDCTISIGNIYFRAHKPVLAA
                     ASLLFKTLLDSTDAISIDASVVSPEEFALLLEMTYTGKLPVGKHNFSKIISLADSLQM
                     FDVAVCCKNLLTNLVNCSVQGQVVRDISVLSSEAGGKESEKPQVEVLSSEGAGEPSSS
                     LEVSAMPAGTEKAKTQEVIHMVTQEISADPPIAQEVQVAAEITGATPHTTEVCSPLPA
                     GQIPSEAKAASTEAGCERKQDQLTLLLEYESVFSSAALLTPDMLRRLEGCSEIEGPQK
                     ETVMECLEAEGGGSAFQRILDKVHDGSLDVQVALSLMRLCQESTPAEKVSQIEGSAGE
                     GKTLSVLLLEHKEDLIQCVTQLRPIVEFLETAKEEFLPDSEKRVIQICCEGRTPKETV
                     ENLLHRVTEEKTLPAKSLVKLLQAVRTAFPNLGLLLENLQKVAESPGTTGLTRATRET
                     AWTEEPKRLCIPADRVDGSSPNPDAYGAELLRKYHENLSEILIDSQVLLKVISRLKSL
                     APGDREVMQTLVKQDSGSGGVSSLMSAALERQTVSAAAIWQLLLAAQETETCPLNLLL
                     EEVEREPGAGAFFRAVTAPESTVLETILRHSKLVREAIQQTVGREHLSSEEEHLAETV
                     KEMLSISSETVSPEASLRVVLSRAMEKSVSASVVCHLLCSVHRSFPGLQPLMQELAHV
                     GFLTKENAEERWKVTDGLHPGAKDKTEEAAEAAREDGRAMEQKEQGPEPVPERQEKDT
                     SASPDAAKKSFVCKACDKSFHFYCRLKVHMKRCRVAKSKQAQGKGDSDTRDSEKELGR
                     QQPEARSAGAEPDAPKKKKKRLPVTCDLCGREFAHASGMQYHKLTEHFDEKPFSCEEC
                     GAKFAANSTLKNHLRLHTGDRPFMCKHCLMTFTQASALAYHTKKKHSEGKMYACQYCD
                     AVFAQSIELSRHVRTHTGDKPYVCRDCGKGFRQANGLSIHLHTFHTDIEDPYDCKKCR
                     MSFSTLQDHRKHIHDVHSKEYHPCPTCGKIFSAPSMLERHMVTHVGGKPFSCGICNKA
                     YQQLSGLWYHNRTHHPDVFAAQNHRSPKFSSLQCSSCDKTFSNTIEHKKHIKTEHADL
                     KFHECGQCKELFPTPALLQVHVKCQHSGSQPFRCLYCAATFRFPGALQHHVTTEHFKQ
                     SESTFPCELCGELFTSQAQLDGHLESEHPKVTGTETQAAASRMVQVIQAPEPAAPAEQ
                     VITLEETQLAGSQVFVTLPDPQTSQNSSELVAVTVEDLLDGTVTLICGEAK"
     exon            1009..1142
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1299
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1442
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            1443..1635
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1716
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            1717..1853
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            1854..2055
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            2056..2189
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2358
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            2359..2817
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            2818..3024
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            3025..3189
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            3190..3407
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            3408..3570
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            3571..3657
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            3658..3884
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
     exon            3885..4238
                     /gene="Zbtb40"
                     /gene_synonym="RGD1309866"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctgggcgt ccccggcccc aagatggctg ccttttggcg tctccagcgc tgttgaatgg
       61 agaaagcttt attgttccct tcgggcagga gtgttcgtgt tctctatggc gctgtcaata
      121 aagaacggca gtttgaatcg gtactgaaca gacagaaact caagtatcct agagtcactt
      181 caaactgtgt gtccaaggac aactttaaac ttcggatcct cctccctcta cgtcttgagt
      241 tccgggttta cgattattgg acttggtgga gtctgaaggt ctagaggaag ggttcgaggg
      301 tggcccacac catggaactc cctaactaca gccagcagct gcttctgcag ctctacgccc
      361 tgtgcaagga gcagcggttc tgtgattgca ccatttccat cggcaacatc tacttcaggg
      421 cccacaagcc agtcctggca gcagccagcc tcctgttcaa aaccctgctg gatagcacag
      481 atgccatctc cattgatgca tcagtggtga gccctgaaga gtttgccctc ttgttagaaa
      541 tgacatatac cggcaagcta cctgtgggca agcacaactt ctccaagatc atctccttag
      601 cagatagcct gcagatgttt gacgtggctg tttgttgtaa aaatcttctg accaacctcg
      661 taaactgctc tgtccagggg caggtggtaa gggatatctc agtgctgtcc tcagaggcag
      721 gtggcaagga atcagagaag cctcaagtag aagtcctttc ctctgaaggt gctggggagc
      781 cctcttcttc cctggaagtt tctgccatgc cagcaggcac tgagaaagcc aagacccagg
      841 aagtaattca catggttact caagagataa gtgcagaccc tcccattgcc caggaggttc
      901 aggtggctgc agagatcaca ggggcaactc ctcacacaac cgaagtttgt tcccctctcc
      961 ctgctggaca gatcccaagt gaggcaaagg cagccagtac agaagcaggg tgtgagagga
     1021 agcaggacca actgactctc ctgctagaat atgaaagtgt cttctcaagt gcagccttgc
     1081 tcaccccgga catgctgagg agactggaag gatgctctga gattgaaggg cctcagaagg
     1141 agaccgtaat ggaatgtctc gaggccgaag gaggaggctc agcattccag agaatcctgg
     1201 acaaagtgca tgatgggagc ctggatgtgc aggtggccct gtctctgatg agactatgcc
     1261 aggagtccac acctgcagag aaagtgtctc agattgaagg gagcgcagga gagggaaaga
     1321 ccttgtctgt tctgttacta gaacacaaag aggacctgat ccagtgtgta acacagctca
     1381 gacctattgt ggagttcctg gaaacagcca aggaggaatt cctgccagac tcggaaaaaa
     1441 gggtgattca gatctgctgt gagggcagaa cacccaagga gacggtagag aatttgttgc
     1501 acagagtgac ggaagagaag accctgcctg ccaagagtct ggtaaaactc cttcaggctg
     1561 tgaggacagc attcccaaac ctgggcctcc tgctggagaa tttgcagaaa gtagcggaat
     1621 cacctggcac cacaggcctg accagagcta cccgtgaaac tgcatggaca gaggagccca
     1681 agagattgtg cattccagcg gaccgtgtgg atggatcctc ccccaaccct gatgcctacg
     1741 gagccgagct gttgagaaag taccatgaaa acctgtctga gattctcata gacagccagg
     1801 tgctgctaaa ggtgatctca cggctgaaga gcttagcccc cggagacaga gaggtcatgc
     1861 agaccctcgt gaaacaggac tctggctcgg gtggcgtcag ttccctgatg tcagcagctc
     1921 tggaaaggca gactgtctct gcagcggcca tttggcagct gctgctagcg gctcaagaga
     1981 ccgagacctg cccgctgaac ctgctgttag aggaagtaga gagggagcct ggcgctgggg
     2041 cttttttccg ggcagtaact gccccagaga gcacggtgtt ggaaaccatc ctgaggcata
     2101 gcaagctggt ccgcgaggcc atccagcaga cagtggggcg tgaacacctt tcttcagagg
     2161 aagagcacct ggcagagact gtgaaagaga tgctgagcat atcctccgag acggtgagcc
     2221 ctgaagcctc cctgagagtg gtgctgagca gagccatgga gaaatccgtc tcagcctctg
     2281 tggtctgtca cctcctatgc agtgtccaca ggtctttccc tggcctgcag cccctcatgc
     2341 aggagttggc acatgttggt ttccttacca aggagaatgc agaggagagg tggaaggtga
     2401 ccgacgggct tcaccctgga gccaaggaca aaacggagga ggcagctgag gcagccagag
     2461 aagacggccg ggccatggaa caaaaggagc agggacctga gcctgtgcca gagcggcagg
     2521 aaaaagacac ttctgcctcc ccagacgctg ccaagaagag cttcgtctgc aaagcctgtg
     2581 acaagagctt ccatttctac tgccgtctga aggtgcacat gaagcgctgc cgggtggcca
     2641 agagcaagca ggcacagggc aagggtgaca gtgacaccag ggactcggag aaggagctgg
     2701 ggaggcagca gccggaggcc cgcagcgcgg gtgcagagcc cgatgctccc aagaagaaga
     2761 agaagcgact gccagtgaca tgcgacctct gcggaagaga gttcgcccac gcctcaggca
     2821 tgcagtacca caagctgacg gagcacttcg acgagaaacc tttctcctgt gaggaatgtg
     2881 gggcaaagtt tgcagccaac tctaccctaa agaaccacct gcgcctccac accggggacc
     2941 gcccgttcat gtgcaagcac tgcctcatga ccttcacaca ggcctcggcc ctggcttacc
     3001 acaccaagaa gaagcactcg gaagggaaaa tgtacgcatg ccagtactgt gatgctgtgt
     3061 tcgcccagtc gatcgagctg tctcggcatg tgaggaccca cacgggggac aagccgtatg
     3121 tctgtaggga ctgtggaaag ggcttccggc aagccaacgg cctctccatc cacctgcaca
     3181 ccttccacac agacatagaa gatccttatg attgcaagaa atgcaggatg agcttctcca
     3241 cactgcagga tcaccggaag cacatccacg acgtgcactc caaggagtac cacccctgcc
     3301 ccacatgtgg gaagatcttc agtgctcctt ccatgctgga gcggcacatg gtgacccacg
     3361 ttggagggaa gccctttagc tgtgggatct gcaacaaggc ctatcagcaa ttgtcaggtc
     3421 tatggtacca caaccggaca caccacccag atgtgttcgc tgctcagaac catcggtcac
     3481 ccaagttctc atcactgcag tgcagctcct gtgacaagac cttttccaac accatcgagc
     3541 acaagaagca catcaaaaca gagcacgcag atctgaagtt ccatgagtgt ggccagtgta
     3601 aggagctctt ccccacacca gctctgctgc aggttcacgt caaatgtcag cattcagggt
     3661 cacagccatt ccggtgcttg tactgtgcag ccactttccg cttccctgga gcactgcagc
     3721 accacgtcac cacagagcac ttcaagcagt cagaaagcac cttcccctgt gagctctgtg
     3781 gcgagctctt cacctcccag gcccagcttg atggccactt ggagtctgag cacccaaagg
     3841 tgacaggcac tgagacccag gcagctgcct ctcgcatggt gcaggtgatc caagctccag
     3901 agccagcagc cccggccgag caggtgatca cgttggagga gacgcagctt gctggctcac
     3961 aggtgtttgt gaccttgcca gacccacaga cctcccagaa cagctctgag cttgtggcag
     4021 tgacggtgga ggatttgctg gatggtactg tcactttgat ctgtggtgaa gccaagtgag
     4081 tggctgctcc ttcagtagag gagcctgtgt tggaccagca cggatgccca cggcctacct
     4141 ctgctgctta gctaagctcc accctggtgc tctcacgggg aagacagagg ctttgtcatt
     4201 ttcctgggat ccagtgtctg agctaaccac actggtgc
//
