LOCUS       NM_001130537            5886 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 39
            (Zbtb39), mRNA.
ACCESSION   NM_001130537 XM_001056869 XM_234781
VERSION     NM_001130537.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5886)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Mar 2, 2021 this sequence version replaced NM_001130537.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.27041.1,
                                           SRR26643296.19789.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                JAXUCZ010000007.1  65462255-65462340
            87-5886             JAXUCZ010000007.1  65464007-65469806
FEATURES             Location/Qualifiers
     source          1..5886
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..5886
                     /gene="Zbtb39"
                     /gene_synonym="RGD1306532"
                     /note="zinc finger and BTB domain containing 39"
                     /db_xref="GeneID:299510"
                     /db_xref="RGD:1306532"
     exon            1..86
                     /gene="Zbtb39"
                     /gene_synonym="RGD1306532"
                     /inference="alignment:Splign:2.1.0"
     exon            87..5886
                     /gene="Zbtb39"
                     /gene_synonym="RGD1306532"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..2266
                     /gene="Zbtb39"
                     /gene_synonym="RGD1306532"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein
                     39"
                     /protein_id="NP_001124009.1"
                     /db_xref="GeneID:299510"
                     /db_xref="RGD:1306532"
                     /translation="MGMRIKLQSSNHPNNLLKELNKCRLSETMCDVTIVVGSRSFPAH
                     KAVLACAAGYFQNLFLNTGLDAARTYVVDFITPANFEKILSFVYTSELFTDLINVGVI
                     YEVAERLGMEDLLRACHSTFPDLESTTIAKSLTSTSDSPCVTLSCPSVDPTHPLGELR
                     GSGEHFGPDRNYALPTDAGGSYKEEERAIAGDTNHSLPLPQVPLPPKSEDHDAPVPFT
                     SVPSMVTPPPVLGTVSTGIQTSTTSSCQPYKVQSNGDFGKSNFFTSDNALDITPQTNP
                     CLSNNDQARDPGFGQMDELQLEDLGDEDLQFEDPAEDLGTTEEVIELSDDSEDDLAFG
                     DNRENKAMPCQVCKKVLEPNIQLIRQHARDHVDLLTGNCKVCETHFQDRNSRVTHVLS
                     HIGIFLFSCDMCETKFFTQWQLTLHRRDGIFENNVIVHPNEPLSGKLGLFPGAASPEL
                     KCAACGKALAKDFHVVRGHILEHVSLKGQACSVCDQRHLNLCSLMWHTLSHLGISVFS
                     CSVCASSFVDWHLLEKHMAVHQSLEDVLFRCHLCSQSFRSEAAYRYHVSQHKCSSGLD
                     PRPAVGLPHLALQKRKLPAEDFLSEELALQGQPGNSKYSCKVCGKRFAHTSEFNYHRR
                     IHTGEKPYQCKVCHKFFRGRSTIKCHLKTHSGALMYRCTVCGHYSSTLNLMSKHVGVH
                     KGSLPPDFTIEQTFMYIIHSKEAEKNPDS"
ORIGIN      
        1 cctcgtcggg ccgggcacgg cgggccgggg cctttgtgtg aggcggcggc ggcggcggcg
       61 atggtgctcg ggccccgcgg agccggattg accttgctga tactgaggca acttcccagg
      121 agctgctaag atgggcatga ggatcaaact gcaaagcagc aaccacccca acaacctgct
      181 gaaggaactc aacaagtgcc ggctgtcaga gaccatgtgc gatgtcacca tcgtggtggg
      241 gagccgctcc ttccctgccc acaaagccgt gctggcttgt gccgctggtt acttccagaa
      301 cctcttctta aacaccgggc tagatgctgc ccgcacctat gtggtggact tcattactcc
      361 tgccaacttt gagaagatcc tgagctttgt gtacacatca gagctcttca cagacctgat
      421 caacgttggg gtcatctatg aggtcgctga gcgtctgggt atggaggacc tcctccgagc
      481 ctgccattcc actttccctg acctagagag caccacgatc gctaagtcct taaccagtac
      541 cagtgacagc ccatgtgtca ctctgagttg tccttcagtt gatcccaccc accccctggg
      601 agagctccgg gggagtgggg aacactttgg tcccgataga aactatgcac tgcctactga
      661 tgcaggagga agctataaag aggaagagcg ggctatcgcg ggcgacacta atcatagctt
      721 gcctctgcca caagtaccac tgccaccaaa gtcagaagac catgacgccc ctgttccctt
      781 cacttctgtt cctagtatgg tgaccccacc accagtccta ggcacggtca gcacaggcat
      841 ccagaccagc actacaagtt cttgccagcc atacaaagtt caaagcaatg gagacttcgg
      901 taaaagcaac ttcttcacct cggataatgc tctagacatt acaccccaga ccaatccctg
      961 tttgagcaat aacgaccagg ccagagaccc aggctttggg cagatggatg agctccagct
     1021 ggaggacttg ggggacgagg atctgcagtt tgaggaccca gctgaagacc ttgggaccac
     1081 cgaggaggtg attgagttga gcgatgacag cgaggacgac ctggccttcg gtgacaaccg
     1141 ggagaataag gccatgcctt gccaggtatg caagaaagtc ctagagccca acatccagct
     1201 gataaggcag catgctcggg accatgtaga cttgctcaca ggcaactgca aggtgtgtga
     1261 gacccacttc caggaccgaa actcccgggt gacccacgtc ctgtctcaca tcggcatttt
     1321 cctgttttcc tgcgacatgt gtgagacaaa gttcttcacc cagtggcagc tgaccctgca
     1381 ccggcgggat ggaatatttg agaacaatgt cattgtccac cctaacgaac ccctgtctgg
     1441 gaagctgggt ctcttcccag gggcagcctc cccagagttg aaatgtgctg cctgtgggaa
     1501 agcgttggcc aaagatttcc atgtggtccg tggccacatc ctggagcacg tgagtttgaa
     1561 gggccaggcc tgcagtgtct gcgatcagcg ccacctcaac ctatgcagcc tcatgtggca
     1621 cacgctctcc catctgggca tttccgtctt ctcctgttct gtctgtgcca gtagttttgt
     1681 agactggcac cttctagaga agcacatggc tgtgcaccag agcctggagg acgtcctgtt
     1741 ccgctgccac ttatgcagcc agagcttcag gtctgaggca gcctaccgct accacgtcag
     1801 ccagcacaag tgtagcagtg gccttgaccc acgtcccgct gtggggctac cacacctagc
     1861 cctccagaag cggaagctgc ccgctgagga ctttctgagt gaggagctgg ctctgcaggg
     1921 ccaaccaggg aatagtaagt acagctgcaa ggtctgtggc aaaaggttcg cccacacaag
     1981 cgagttcaac taccaccgac ggatccacac aggcgagaaa ccttaccagt gcaaggtttg
     2041 ccacaaattc ttccgaggtc gctcgaccat caagtgccac ctcaagacgc actcaggggc
     2101 actcatgtac cgctgcaccg tctgtggcca ctacagttcc acccttaacc ttatgagtaa
     2161 acatgtcggt gtgcacaaag gcagcctccc acctgacttc accatcgagc agaccttcat
     2221 gtacattata cattccaaag aggctgaaaa gaacccggac agctgactgg gaacccgcag
     2281 agcccgaggg agctcccagg tggccgccgg gatagtgatt ttctaaaggc tgtcagtcct
     2341 tccccagctg acgctacagt ttgccttgtt tgtgttgtgt tgagagaaga aatagcacat
     2401 aagctgttac tgcttttgaa aggcaacagc cctgttacat ttacctcctt acctgttctc
     2461 gcccacagag ggctgcatct tgatttttga ggctggcttt aggatctagt caagcagccg
     2521 ggttaaacta ggtccccttc gccggtttct ctagttttag tttactgata ggttttatgc
     2581 tgctaagagt ctgaccaaca gcctcactcg atggggtttt cactgtggct gtgactgcca
     2641 gtctttggcc agaccacagc tgtgaggagg tttggggatt gtggtcattc agaagggact
     2701 agcagcaggg cagttcatgt cgggtaccca cgcctcctca gcaggggcaa ggtgtcagga
     2761 gcggagggca ctacttgctc cacacctcgg ctctcctgat tggacgattg aacggtggaa
     2821 gtctcttggc agctagatcc aaactgggga ccaggctttc tgtttaggtt ggaaagcttt
     2881 ggggtacccc atggtgccac cagacggggc agcctccatg gatggaagaa gggctcttcc
     2941 tttctcctca tttccaaaga agcgcggttt tgtagagcga aaaccctgga cgtcaaacct
     3001 tctgtcaaga gcagggagga cagagagccg cctcagtgta gtcgtctgcc atctggctac
     3061 ctccgtaaac ttccgtctcc tgggcatgga ggagaggtct cagacagcag cagtcttgcc
     3121 ttaatttaca tcgagtctcc cactcaggac ggtttaacct acagtgtaga tgagaagacc
     3181 atgtgagttt atggtggagc atgagccctt ctggattaaa ggaacctgcg tcaccggtga
     3241 ctgcatggca gggtgtgcat tctgactgtc ccagttgggt aacttgttta cttggtggta
     3301 acagtgtggg agtttggcag ttcacctttg acctgctgga attatcctga tctgtcattg
     3361 catcaccccc agggggcgct cttggatggt agctggctta ggccttctgc gcaactgttt
     3421 ggctccattc ttagtctatg aaggggtctt gcccaaaaga ggctggagag gacccttgat
     3481 cttgcatact tataagtagc tcatactacc tcaccctgct caggtgagct ctaagtcccg
     3541 aattttgggc ccagccaccg acactgcccc ccccccccag tgggactcag ccgcactctg
     3601 ggctgtttca taaacaagtg gttttaatta actcacaaag cctttctaga cattaatatt
     3661 tattttatta ttattattat tttgttttgt atatgtacta cccagcatct cttttcgata
     3721 aatgacttta ggaaaatgag tttctcaagc aaggagccac attccagcag agggttatgg
     3781 ctgcagaggg gagaacaggg gtgtaactag gagagagtgt gccaggcctt ttaagcagca
     3841 cagtttctcc aagcatagtc tctagcagag caaactcaga tcagtcacag gaagaaggtg
     3901 tttgcacagt tttttatcct tccgacatag ggagcatcct atccctatat attaagacac
     3961 agaggcaaac caaagcagta tacagttggg ctggccggcc aactttccca gggctttgaa
     4021 ctgagaaagc cggtgagttg gtgccaagac cttcctgagc tgaatgatgc agctcaaaca
     4081 gttaaggaca cccctccctc cccatctgaa cgtggtgttt tcacagggaa gaggttgctg
     4141 tcgcttttag tttctgactt acagtttaca ctggggatgt gtatcacact acaatgacag
     4201 atctgctgga atttctaagc ttcccctccc tagattgctg ctgaggagtg agtaccgaat
     4261 ggttgctgag atcggagaaa cccttttcct tagcataagg cattgtggat gctgggtggt
     4321 ccgtgtactt aacttgaaac tgtgaagttt tccctttttg ccatgaacca aaaagcagat
     4381 cctttgaagt tttgtccttg gaacactaaa acacaaactg tatcttctga tcccttcagg
     4441 ttaattgatc agggaggtcc agttggtccc gttagacagg cagccattgg gaccagtagc
     4501 tcaggaggct cattgcccaa accatgcctc ttcgggtagc cccatgttcg gaccagtctc
     4561 cccttctgtg tgaagttgta tttgctttcc ctgcagctag ttcttccttc tcttgatgag
     4621 atttactcaa aacattactt ggtagtgaag ggtactccag gacccctgat gggaggtgtt
     4681 aactttattt tgcattttta acttaacacc catttgattt cacgccccct tcatccctgg
     4741 attcccactt agtactattt cctgctgtat cacagtagaa ttctctctga cctttgaatg
     4801 ctctgtcttt gtttgttccc cgtcccctgc cttttatttt attttttggt ctgcactcag
     4861 aaccagctgt acagtgttca gaactgtcgt tcaacaatta ttaggagtat ctagttggct
     4921 atttgaagga cattaagccg gacttgggga catccctggc tcgtttctaa ggggaaatta
     4981 caatgttgat gtggcacact ggcattaaca gcatgtgctg cttgtggcca gaaggtgtgt
     5041 ccacacatgc tggtgtcccc tgacagctcc atgatgccag ggacatcaga aagccctact
     5101 gaacgaaccc tggtatttgg ttctaaattt taagattctg tggagttcct acagttcacg
     5161 gccagttggg aagaaaagag gtgttggtgg ggtcaggtga ccctaagaac aggaaagaca
     5221 taggcgagaa ttacttttga ctttattgtg acctatcccc agccccttgt ctacagggca
     5281 aacctgtaag cctcagaact tttcacccag gcaggacttt gctactgatt atcttccttt
     5341 tctgggttcc tgctgtgctc tctccaccaa accctagact actcaacctt gaaagtgaat
     5401 tcagatccct ttatacatgg actctgaatt cgttggcatg gtagtgggcc ctatgaaatg
     5461 gtctttgcct ggctgggagt gtgtacacgt cccagtcaca tcaagtgaga ccgaaagtgg
     5521 gtgcacgtat acatctccgt gtgatggtac gtcatgatca gtgtctaaga agacgccccc
     5581 tgtggcagtg accctgacat ttcccctctg ccagtcccca cccaccccat ctggagtagc
     5641 tcaagtctcc tgtgaggcag agaggccgtt gctgtctaac tccttccatt aaattaagaa
     5701 gtactgacct cctaaatatt taagtgttta ctatctgctg taaagttttg tatattttgt
     5761 aaacctttcc ctccccaaaa cagtagacgt ctaaaatcgt acatctgatt cttttctatt
     5821 ccattgttca gcacaaagtg tggtttttat ttagaataaa aaaaagagag atggagggga
     5881 aagaaa
//
