LOCUS       NM_001012471            3902 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 38
            (Zbtb38), mRNA.
ACCESSION   NM_001012471 XM_236553
VERSION     NM_001012471.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3902)
  AUTHORS   Miotto,B., Chibi,M., Xie,P., Koundrioukoff,S., Moolman-Smook,H.,
            Pugh,D., Debatisse,M., He,F., Zhang,L. and Defossez,P.A.
  TITLE     The RBBP6/ZBTB38/MCM10 axis regulates DNA replication and common
            fragile site stability
  JOURNAL   Cell Rep 7 (2), 575-587 (2014)
   PUBMED   24726359
REFERENCE   2  (bases 1 to 3902)
  AUTHORS   Buck-Koehntop,B.A. and Defossez,P.A.
  TITLE     On how mammalian transcription factors recognize methylated DNA
  JOURNAL   Epigenetics 8 (2), 131-137 (2013)
   PUBMED   23324617
  REMARK    Review article
REFERENCE   3  (bases 1 to 3902)
  AUTHORS   Bastos-Amador,P., Royo,F., Gonzalez,E., Conde-Vancells,J.,
            Palomo-Diez,L., Borras,F.E. and Falcon-Perez,J.M.
  TITLE     Proteomic analysis of microvesicles from plasma of healthy donors
            reveals high individual variability
  JOURNAL   J Proteomics 75 (12), 3574-3584 (2012)
   PUBMED   22516433
REFERENCE   4  (bases 1 to 3902)
  AUTHORS   Filion,G.J., Zhenilo,S., Salozhin,S., Yamada,D., Prokhortchouk,E.
            and Defossez,P.A.
  TITLE     A family of human zinc finger proteins that bind methylated DNA and
            repress transcription
  JOURNAL   Mol Cell Biol 26 (1), 169-181 (2006)
   PUBMED   16354688
REFERENCE   5  (bases 1 to 3902)
  AUTHORS   Kiefer,H., Chatail-Hermitte,F., Ravassard,P., Bayard,E., Brunet,I.
            and Mallet,J.
  TITLE     ZENON, a novel POZ Kruppel-like DNA binding protein associated with
            differentiation and/or survival of late postmitotic neurons
  JOURNAL   Mol Cell Biol 25 (5), 1713-1729 (2005)
   PUBMED   15713629
  REMARK    GeneRIF: ZENON is involved in the maintenance of panneuronal
            features and/or in the survival of mature neurons.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001012471.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AY623002.1, SRR26360194.1677424.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3902              JAXUCZ010000008.1  106164161-106168062 c
FEATURES             Location/Qualifiers
     source          1..3902
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..3902
                     /gene="Zbtb38"
                     /gene_synonym="RGD1310136"
                     /note="zinc finger and BTB domain containing 38"
                     /db_xref="GeneID:315936"
                     /db_xref="RGD:1310136"
     exon            1..3902
                     /gene="Zbtb38"
                     /gene_synonym="RGD1310136"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..3680
                     /gene="Zbtb38"
                     /gene_synonym="RGD1310136"
                     /note="zenon; zinc finger protein expressed in neurons;
                     zinc finger transcription factor Kaiso"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein
                     38"
                     /protein_id="NP_001012489.2"
                     /db_xref="GeneID:315936"
                     /db_xref="RGD:1310136"
                     /translation="MTVMSLSRDLKDDFHSDTVLSILNEQRIRGILCDVTIIVEDTKF
                     KAHSNVLAASSLYFKNIFWSHTICISSHVLELDDLKAEVFTEILNYIYSSTVVVRRQE
                     TVTDLAAAGKRLGISFLEDLSDRNFSNSPGPYVVCITEKGVVKEEKNEKRHEEPAVTN
                     GPRITNAFSIIETENSNSMFSPLDLRASFKKVSDAMRTTSLCQERASVCPEAEPVRTL
                     AEHSYAVSSITEAYRSQPLREHDSSSSSGKTGKENGEALTTKAKPCRKPKTQTQDSDS
                     TTENMPLPLVTCPEVNQERSPQPAPILSHSEPPSSEGDVHFPREDENQPSETPGPPAA
                     EVPPLVYNCSCCSKSFDSSTLLGAHMQLHKPTQDPFVCKYCNKQFTTLNRLDRHEQIC
                     MRSSHMPMPGGNQPFLENYPTIGQDGGSFTSPDSLVPESRIGELSSAGSALSDADHMV
                     KFVNGQMLYSCVVCKRSYVTLSSLRRHANVHSWRRTYPCHYCNKVFALAEYRTRHEIW
                     HTGERRYQCIFCLETFMTYYILKNHQKSFHAIDHRLSISKKTANGGLKPTVYPYKLYR
                     LLPMRCKRAPYKSYRNSSYESAQGNRQRNESPPDTFVIPNLPSSEMPTLNFQDGRNSL
                     TSSPAIPVETPSWQGTPTSAKVKNAEGLKWRKQALKTDLVDSAEVSISSIGNSVSTTL
                     QAEPVCVSSGEHSASVISYSGSVPSVIVHSSQFSSVIKHSNAIACLANSNHQSPSQPV
                     ASPSLIKDSKPEADKASKLASRPKNSKEKKKTVPCNRGEITEEAKYVADLGGSSGKTT
                     NVVEETSKIETYIAKPALPGTSTNSNVAPLCQITVKIGNEAIVKRHILGSKLFYKRGR
                     KPKYQMQEETLPRESDPETRGDSPLGLCQADCVEMSEAFDEVSDQDSTDKPWRPYYNY
                     KPKKKSKQLRKIRKVKWRKERGSRSPVGRRRYPAELDRAEMGRRRYPAELDRCAEVKL
                     PPDKASEEEENKEMPKLQCELCDGDKAAGAGAEGKPHQHLTLKPYICELCAKQFQSSS
                     TLKMHMRCHTGEKPYQCKTCGRRFSVQGNLQKHERIHLGVKEFICQYCNKAFTLNETL
                     KIHERIHTGEKRYHCQFCFQGFLYLSTKRNHERRHVREHDGKGFACFQCPKICKTAAA
                     LRMHQKKHLFKTLTKQEETDDLCHENSDLLESQPCTDSEDSDQKDDIKKPLLKMSFE"
ORIGIN      
        1 gtagcacata gcctagaaat gactaagtcg ctgatgggag gcccctgacc atttgtttct
       61 tgtttcagat gacagtcatg tccctctcca gggacctcaa ggacgacttt cacagtgaca
      121 cggtgctctc catcctaaat gagcagcgca ttcggggcat cttatgtgat gtcaccatca
      181 ttgtggagga caccaagttt aaagcccaca gcaatgtcct ggccgcctca agcctttatt
      241 tcaaaaacat cttttggagc catacgatct gtatttccag tcatgtccta gagctggatg
      301 atctgaaagc cgaagtgttt acagagattc ttaattacat ctacagctcc accgtggtgg
      361 tcaggagaca ggaaaccgtc actgaccttg cagctgcagg gaaaaggctg ggaatatcat
      421 tcttagagga ccttagtgac cgcaacttct caaattcccc aggtccttac gtagtttgca
      481 tcactgaaaa gggcgtggtt aaagaagaaa aaaatgaaaa aaggcacgaa gagccagctg
      541 tcactaatgg gcccaggatc acaaacgcat tttccatcat tgagacggaa aatagcaata
      601 gcatgttttc tcccctggac ttgagggcaa gcttcaaaaa agtgtcagat gccatgagaa
      661 ccactagcct ttgccaggag agagccagtg tctgccccga ggcagagcct gtccgcacgc
      721 ttgccgaaca ctcatatgcc gtttcttcca tcactgaggc ctacaggagt cagcctctga
      781 gggaacatga cagcagcagt tcatctggta aaacgggaaa agaaaatggc gaagctctca
      841 ccacaaaagc aaagccatgc cgaaagccaa agacccaaac ccaggattct gactcaacca
      901 cagagaacat gccactccct ctagtaacct gcccagaggt gaatcaagaa agaagcccac
      961 agccagctcc aattctgtca cactcagaac ctcccagcag tgaaggagat gtccattttc
     1021 ccagagaaga tgaaaaccag ccctctgaga ctcctggtcc cccagcagca gaggtcccgc
     1081 ccctcgttta taattgtagc tgctgctcca aatccttcga cagcagcaca ctgctcgggg
     1141 cccacatgca gctgcacaag ccgacgcagg acccctttgt gtgcaagtac tgcaacaagc
     1201 agttcaccac cctcaacagg ctggaccggc acgagcagat ctgcatgagg tcgagccaca
     1261 tgcccatgcc aggaggaaac caacccttct tagaaaacta ccccaccatt ggacaagatg
     1321 gaggttcatt cacaagccca gattcattgg tgccagaaag taggattggt gaactatcca
     1381 gcgctgggag tgccttgtca gacgcggacc acatggtgaa atttgtgaat gggcagatgc
     1441 tttacagctg cgttgtgtgc aaacgtagct atgtgacttt gtccagcctc cggaggcacg
     1501 caaatgtcca ctcgtggaga agaacgtacc cttgtcatta ctgcaacaag gtcttcgcac
     1561 tggctgagta caggacacga catgagatct ggcacactgg agagaggcgg taccagtgca
     1621 ttttctgtct tgaaacgttt atgacctact acatactgaa aaaccatcag aagtcttttc
     1681 atgccataga tcacagactc tccatcagta aaaaaacagc aaatggaggc ttgaagccca
     1741 ccgtctaccc atacaaactt tacaggctct tgcctatgag atgcaagcgg gcaccttata
     1801 agagctaccg gaattcttcc tatgaaagtg ctcaaggaaa ccgtcaaagg aatgaatccc
     1861 cacctgacac cttcgtcatt ccgaatctgc caagctctga aatgcccaca ctgaacttcc
     1921 aagatggcag aaactcgttg accagcagcc ctgccatccc agtggaaaca ccttcatggc
     1981 agggtacacc cacttctgcc aaagtaaaaa atgcagaagg cctcaaatgg aggaagcagg
     2041 cactgaaaac cgatctcgtc gattcggctg aggtgtcgat ttcttccatt ggaaactctg
     2101 tcagcaccac cctgcaggca gagcccgtgt gtgtttcgag tggggagcac tcggcctccg
     2161 tgatcagcta cagcggctcg gtgccctctg tcattgtgca cagcagccag ttctcgtcgg
     2221 tgatcaagca cagcaatgcc attgcctgcc tggccaacag caaccaccag tccccttcac
     2281 agcctgtggc gagtccgtcc ctgatcaagg atagcaagcc tgaggcagat aaagccagta
     2341 aactcgcaag cagacccaaa aactctaagg agaaaaagaa aaccgttcca tgtaacaggg
     2401 gagaaataac agaggaggca aaatatgttg ctgatctcgg aggatcttcg ggcaaaacca
     2461 caaatgtcgt cgaagaaacc agtaagattg aaacttatat agcaaaaccc gctctgcccg
     2521 gcacctccac aaatagcaat gttgcacccc tttgccaaat aacagtgaaa attgggaacg
     2581 aagccatcgt gaaaaggcat atccttgggt ctaagctgtt ttacaaaaga gggagaaaac
     2641 ccaagtatca aatgcaggaa gagacattgc ctcgggagag tgaccccgaa acccgtggag
     2701 acagccctct tgggctctgc caagctgact gtgtggagat gagtgaagca tttgatgaag
     2761 tgagtgacca ggactccacc gataagccgt ggcgcccata ctacaactac aagcccaaga
     2821 agaaatccaa acagttaaga aaaataagga aagtcaagtg gaggaaggaa cgagggagca
     2881 gaagccccgt gggtcggcgc aggtatccag ctgagctgga tcgcgcagag atgggtcggc
     2941 gcaggtaccc agctgaacta gatcgctgcg cagaggtgaa attgccccca gataaggcct
     3001 ctgaagaaga ggagaataaa gagatgccca agctgcagtg cgagctctgt gacggtgaca
     3061 aagcagcagg ggcgggagcc gaaggcaagc cccaccagca tctcactctg aagccttaca
     3121 tctgcgagct ctgtgcgaag cagttccaga gctcctccac gctcaagatg cacatgagat
     3181 gccacactgg cgagaagccc taccagtgca agacctgtgg gcggcgcttc tcagtgcagg
     3241 gcaacctaca gaagcacgag cgcattcacc tgggcgtgaa ggagttcatc tgtcagtatt
     3301 gtaacaaggc tttcacgctg aacgagacac tcaagatcca cgaaagaatc cacacagggg
     3361 agaagcgtta ccactgtcag ttctgctttc agggtttctt atatctctcc acaaaaagga
     3421 accacgagcg gaggcatgtc cgggagcatg acgggaaagg ctttgcttgc ttccagtgcc
     3481 ccaaaatatg caaaacagct gctgccctca gaatgcacca aaagaagcac ttattcaaga
     3541 ccttgactaa gcaagaggaa acagatgacc tttgccacga aaactccgat ctcttggaga
     3601 gtcaaccttg cactgattcg gaagacagcg accaaaagga tgacataaaa aaacctttgc
     3661 tgaaaatgtc ctttgagtga caacagttag aaaggtcttc aaaattgttt gtgatttttt
     3721 ttatttttag ttttttaagt ttttttaagc ttagttttgt tcacataata ttctcaaagg
     3781 atggggggtt gttaattttc ctttgtgtaa actcccccca aaaaggatcc taacaactat
     3841 tttgggtttt atcattcact ctacacagaa tgcataaaaa caaactagct gaatcctcta
     3901 ac
//
