LOCUS       XM_039104192            2030 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Z-DNA binding protein 1 (Zbp1),
            transcript variant X5, mRNA.
ACCESSION   XM_039104192
VERSION     XM_039104192.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104192.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2030
                     /gene="Zbp1"
                     /gene_synonym="Dlm1"
                     /note="Z-DNA binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 4 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     31 samples with support for all annotated introns"
                     /db_xref="GeneID:171091"
                     /db_xref="RGD:619956"
     CDS             339..1568
                     /gene="Zbp1"
                     /gene_synonym="Dlm1"
                     /codon_start=1
                     /product="Z-DNA-binding protein 1 isoform X1"
                     /protein_id="XP_038960120.1"
                     /db_xref="GeneID:171091"
                     /db_xref="RGD:619956"
                     /translation="MAEASVDLGTGDNLEQKILQVLSDAGSPVQIDQLLKKLQVPKKI
                     LNQVLYRLKKEGRVSSPAPATWSLGGDGASGDGAPEIPEDSAAQPSLEERILRFLETK
                     GPQRALHIAKALGMTTAKEVNPILYSMRNKHLLTVSDTQMWTIYRSSQEGQERACSGV
                     GQESPAVIYQQNPINMICQQGPNSLISISNSKAIQIGHGNVMSRQTICGDPGPGTPHH
                     APLPVLEDAAAQDTPPGTHGAQLIHLNKSMLRRVQLGHGNEMNLERDPVEHPIFSFSS
                     SPPESTTTADPETAFNMQTPEPGPHPEGGTTQIVHIKSCLLEDTTVGNNNKMTIHRRS
                     KGGAKESADSQELKEDTGASSEATPPRSCLHTPSDSTLLTSELTAMALGDGSPQITES
                     MLREDEVQAAETCQTQD"
ORIGIN      
        1 agctaaggtc agacacgttc agacagcctt cagtcaacac acaggctgtg tgcaggaggt
       61 ttgatgttgc cccctgaccc cagaggaggg gagagcaagc tgtttgaagg tgaagaccaa
      121 cctcagttga caccagtgag gcccgtaggg cactgttttt cctccctgga agtcataaaa
      181 agcacttgga aatgttaaag ttttcccaag ctgtgcggat ctggcctgat ggtggcctgc
      241 ctggtgacct tttcaggctc cgagagagcc ccaggcctgg ccacagtgct gggacctgcc
      301 acccccaccc ctaaaagtgc cccacggctg ctgggagcat ggcggaggct tctgtggacc
      361 tgggcacggg agacaacctg gagcagaaga tcctgcaggt gttgagtgat gctggtagtc
      421 ctgtgcagat cgaccagctg ttgaagaagt tacaagtgcc caagaaaatc ctcaaccaag
      481 tcctttaccg cctgaagaaa gagggccgag tgtcctcgcc ggcgccagcg acgtggtcct
      541 taggtggaga tggggcttcc ggagatgggg ctcccgagat ccctgaggac tccgctgccc
      601 agcctagcct tgaagaaagg atattaagat tcctggagac taaagggccc cagagggccc
      661 tgcatatcgc caaggctctg ggaatgacga cggccaaaga agtgaacccc atcctgtatt
      721 ccatgaggaa taagcacctt ctgaccgtgt ctgacacaca gatgtggacc atctaccgct
      781 caagccagga aggccaagag cgagcttgtt ccggagtcgg acaagagtcc cctgcggtta
      841 tttaccagca aaatccgatc aacatgatct gccaacaagg acccaacagc ctcatctcta
      901 tttccaactc aaaagccatc cagattggcc atgggaatgt tatgtcaaga cagacaatct
      961 gtggtgaccc aggtcccggg actcctcacc acgcccctct acccgtgcta gaggatgctg
     1021 ctgctcagga cacgccccct ggtacccacg gagctcaact catccacctg aacaagtcca
     1081 tgctccgacg tgtgcagctc ggccacggca acgagatgaa cctcgagagg gatccagtgg
     1141 aacaccccat tttcagcttt agtagtagcc ccccagagtc aaccaccact gcagacccag
     1201 aaactgcatt caacatgcaa acacctgagc caggccctca ccctgaggga ggcacaaccc
     1261 agatagtcca catcaaatcc tgcttgctag aggacacgac cgtcggcaac aacaacaaga
     1321 tgaccatcca ccgtaggtca aagggtggag ccaaggagtc tgcagacagc caagaactga
     1381 aagaagacac aggtgcaagt tctgaagcca cgccacccag aagctgcttg cacacaccca
     1441 gcgactccac cctgctcacc tctgagctga cagctatggc tctgggagat ggcagccccc
     1501 agatcacaga atctatgctt agagaggatg aagtgcaggc cgcagaaacc tgtcagacgc
     1561 aggactgagg ccagaaagca atggagccac aagaccatag acctctctgc caccatgagc
     1621 caaaccaacc tttcctgcct caagatcaat gaatcaatca atacatcgat cagtcaacca
     1681 tatgagccag ttgtaccact cctgggtgtt caccggaagg gaaaagtcaa cacagagaga
     1741 cgtctgcata tccatgcaga cggtggtcct gttcccagca gataagagat ggaaccaacc
     1801 ttgctgtccc gcagtaaaag atgggcgaat gtggagtagc acacagccat gaaaaatact
     1861 gaggttgtca ttggctggaa gaagatgaca ccagagacca ccacgttaag tgaatgaaag
     1921 ccatcttaga atgacaacgg tcacgtcttc ctctcttttg tggctcctgg actttatgat
     1981 agattcctgg aatcatacac agatgtgaca ttaaagtaca cgtgacacca
//
