LOCUS       XM_006235674            2692 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Z-DNA binding protein 1 (Zbp1),
            transcript variant X2, mRNA.
ACCESSION   XM_006235674
VERSION     XM_006235674.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006235674.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006235674.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2692
                     /gene="Zbp1"
                     /gene_synonym="Dlm1"
                     /note="Z-DNA binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 4 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     43 samples with support for all annotated introns"
                     /db_xref="GeneID:171091"
                     /db_xref="RGD:619956"
     CDS             1001..2230
                     /gene="Zbp1"
                     /gene_synonym="Dlm1"
                     /codon_start=1
                     /product="Z-DNA-binding protein 1 isoform X1"
                     /protein_id="XP_006235736.1"
                     /db_xref="GeneID:171091"
                     /db_xref="RGD:619956"
                     /translation="MAEASVDLGTGDNLEQKILQVLSDAGSPVQIDQLLKKLQVPKKI
                     LNQVLYRLKKEGRVSSPAPATWSLGGDGASGDGAPEIPEDSAAQPSLEERILRFLETK
                     GPQRALHIAKALGMTTAKEVNPILYSMRNKHLLTVSDTQMWTIYRSSQEGQERACSGV
                     GQESPAVIYQQNPINMICQQGPNSLISISNSKAIQIGHGNVMSRQTICGDPGPGTPHH
                     APLPVLEDAAAQDTPPGTHGAQLIHLNKSMLRRVQLGHGNEMNLERDPVEHPIFSFSS
                     SPPESTTTADPETAFNMQTPEPGPHPEGGTTQIVHIKSCLLEDTTVGNNNKMTIHRRS
                     KGGAKESADSQELKEDTGASSEATPPRSCLHTPSDSTLLTSELTAMALGDGSPQITES
                     MLREDEVQAAETCQTQD"
ORIGIN      
        1 agctaaggtc agacacgttc agacagcctt cagtcaacac acaggctgtg tgcaggaggt
       61 ttgatgttgc cccctgaccc cagaggaggg gagagcaagc tgtttgaagg tgaagaccaa
      121 cctcagttga caccagtgag gcccgtaggg cactgttttt cctccctgga agtcataaaa
      181 agcacttgga aatgttaaag ttttcccaag ctgtgcggat ctggcctgat ggtggcctgc
      241 ctggtgacct tttcaggctc cgagaggtaa agctgactgg ggacctgctg ccagctgctt
      301 gctttgcaga catcacctcc ttctggtctc cattgactgt tcctgtcccg ccctgtgcac
      361 cagggacctg cacaccagac aggtcccccc accctgtagc tgggacccag attcagggat
      421 tattatgggc tgagtggtga acacaaggcc atctctgtga gtctccatcc ccctctcccg
      481 taatatggac agagaggtgt ctgaactgtt ctcgggccgc tgagaattta tgaaagtgaa
      541 aggagtctgt ctcttcttct aaaacatatg tgggtagaca gtactagacc aggcaggaga
      601 ggcaccgtgg gtgccttttc ctagatcacc atcttcctcc tcacagggct ttcagagtcc
      661 tcttcaggtc tcactcttcc cgtgggcagt cccaccccag aggccaagac cccgctcttt
      721 tctgtcacat ggtctgtcca actccagctt cctcatccac cctgattttg acaattcttt
      781 cattcgagaa tcacaccaaa gtttcatttt ctgtttcttc agaaagccag agggcgggga
      841 aggggtgcag ccagatgggt attagtttcc ggggtggtaa cagctggtgt ctgcaggtcc
      901 aaacaagcat tctttcttgt ggactcagag ccccaggcct ggccacagtg ctgggacctg
      961 ccacccccac ccctaaaagt gccccacggc tgctgggagc atggcggagg cttctgtgga
     1021 cctgggcacg ggagacaacc tggagcagaa gatcctgcag gtgttgagtg atgctggtag
     1081 tcctgtgcag atcgaccagc tgttgaagaa gttacaagtg cccaagaaaa tcctcaacca
     1141 agtcctttac cgcctgaaga aagagggccg agtgtcctcg ccggcgccag cgacgtggtc
     1201 cttaggtgga gatggggctt ccggagatgg ggctcccgag atccctgagg actccgctgc
     1261 ccagcctagc cttgaagaaa ggatattaag attcctggag actaaagggc cccagagggc
     1321 cctgcatatc gccaaggctc tgggaatgac gacggccaaa gaagtgaacc ccatcctgta
     1381 ttccatgagg aataagcacc ttctgaccgt gtctgacaca cagatgtgga ccatctaccg
     1441 ctcaagccag gaaggccaag agcgagcttg ttccggagtc ggacaagagt cccctgcggt
     1501 tatttaccag caaaatccga tcaacatgat ctgccaacaa ggacccaaca gcctcatctc
     1561 tatttccaac tcaaaagcca tccagattgg ccatgggaat gttatgtcaa gacagacaat
     1621 ctgtggtgac ccaggtcccg ggactcctca ccacgcccct ctacccgtgc tagaggatgc
     1681 tgctgctcag gacacgcccc ctggtaccca cggagctcaa ctcatccacc tgaacaagtc
     1741 catgctccga cgtgtgcagc tcggccacgg caacgagatg aacctcgaga gggatccagt
     1801 ggaacacccc attttcagct ttagtagtag ccccccagag tcaaccacca ctgcagaccc
     1861 agaaactgca ttcaacatgc aaacacctga gccaggccct caccctgagg gaggcacaac
     1921 ccagatagtc cacatcaaat cctgcttgct agaggacacg accgtcggca acaacaacaa
     1981 gatgaccatc caccgtaggt caaagggtgg agccaaggag tctgcagaca gccaagaact
     2041 gaaagaagac acaggtgcaa gttctgaagc cacgccaccc agaagctgct tgcacacacc
     2101 cagcgactcc accctgctca cctctgagct gacagctatg gctctgggag atggcagccc
     2161 ccagatcaca gaatctatgc ttagagagga tgaagtgcag gccgcagaaa cctgtcagac
     2221 gcaggactga ggccagaaag caatggagcc acaagaccat agacctctct gccaccatga
     2281 gccaaaccaa cctttcctgc ctcaagatca atgaatcaat caatacatcg atcagtcaac
     2341 catatgagcc agttgtacca ctcctgggtg ttcaccggaa gggaaaagtc aacacagaga
     2401 gacgtctgca tatccatgca gacggtggtc ctgttcccag cagataagag atggaaccaa
     2461 ccttgctgtc ccgcagtaaa agatgggcga atgtggagta gcacacagcc atgaaaaata
     2521 ctgaggttgt cattggctgg aagaagatga caccagagac caccacgtta agtgaatgaa
     2581 agccatctta gaatgacaac ggtcacgtct tcctctcttt tgtggctcct ggactttatg
     2641 atagattcct ggaatcatac acagatgtga cattaaagta cacgtgacac ca
//
