LOCUS       NM_001398831            6272 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus zinc finger, BED-type containing 6 (Zbed6), mRNA.
ACCESSION   NM_001398831 XM_039091314
VERSION     NM_001398831.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6272)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6272)
  AUTHORS   Wang,X., Jiang,L., Wallerman,O., Engstrom,U., Ameur,A., Gupta,R.K.,
            Qi,Y., Andersson,L. and Welsh,N.
  TITLE     Transcription factor ZBED6 affects gene expression, proliferation,
            and cell death in pancreatic beta cells
  JOURNAL   Proc Natl Acad Sci U S A 110 (40), 15997-16002 (2013)
   PUBMED   24043816
REFERENCE   3  (bases 1 to 6272)
  AUTHORS   Butter,F., Kappei,D., Buchholz,F., Vermeulen,M. and Mann,M.
  TITLE     A domesticated transposon mediates the effects of a
            single-nucleotide polymorphism responsible for enhanced muscle
            growth
  JOURNAL   EMBO Rep 11 (4), 305-311 (2010)
   PUBMED   20134481
REFERENCE   4  (bases 1 to 6272)
  AUTHORS   Markljung,E., Jiang,L., Jaffe,J.D., Mikkelsen,T.S., Wallerman,O.,
            Larhammar,M., Zhang,X., Wang,L., Saenz-Vash,V., Gnirke,A.,
            Lindroth,A.M., Barres,R., Yan,J., Stromberg,S., De,S., Ponten,F.,
            Lander,E.S., Carr,S.A., Zierath,J.R., Kullander,K., Wadelius,C.,
            Lindblad-Toh,K., Andersson,G., Hjalm,G. and Andersson,L.
  TITLE     ZBED6, a novel transcription factor derived from a domesticated DNA
            transposon regulates IGF2 expression and muscle growth
  JOURNAL   PLoS Biol 7 (12), e1000256 (2009)
   PUBMED   20016685
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Dec 27, 2021 this sequence version replaced XM_039091314.1.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6272              JAXUCZ010000013.1  47659269-47665540   c
FEATURES             Location/Qualifiers
     source          1..6272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..6272
                     /gene="Zbed6"
                     /note="zinc finger, BED-type containing 6"
                     /db_xref="GeneID:103693666"
                     /db_xref="RGD:9238526"
     exon            1..6272
                     /gene="Zbed6"
                     /inference="alignment:Splign:2.1.0"
     CDS             1362..4313
                     /gene="Zbed6"
                     /note="zinc finger BED domain-containing protein 6-like"
                     /codon_start=1
                     /product="zinc finger BED domain-containing protein 6"
                     /protein_id="NP_001385760.1"
                     /db_xref="GeneID:103693666"
                     /db_xref="RGD:9238526"
                     /translation="MSVCTLSVPVSSISPGRRCSAFSDAGVLGCVSINSNTDEDGVLE
                     GKMVAEGSNKETKLPAKKKRKKGLRIKGKRRRKKLILAKKFSKDLGSGRPVADAPASL
                     ASSAAEQDEESLFDGNIEKQIYLPSTRAKTSIVWHFFHVDPQYTWRAVCNLCEKSVSR
                     GKPGSHLGTSTLQRHLQARHSPHWTRANKFGVTNGEEDFSLDLSLSPSSPGSNGSFEY
                     IPTDSLDENRMGKKRDKSASDALRAKRGRFLIKSNIVKHALIPGTRAKTSAVWNFFYT
                     DPQHISRAVCNICKRSVSRGRPGSHLGTSTLQRHLQATHPIHWAVANKDSGAIGNGLD
                     ETETESGDLLNDTLHGEKSSGSQDLTAEDLSDSDDTDEPPVLEVENRSESPIPVAEQD
                     NLAHTQERETTTDTHCEDAASSQISQAVIQMIVEDLHPYNYFSTPAFQRFLQIVAPDY
                     RLPSETYFFTKAVPQLYDSVREKIFLTLENVQSQKIHLTVDIWTHDPSTDYFIVTVHW
                     VSLETASSPSNGGTPNFRKWAVLCVTGLAKDCLITNILQELNDQIGLWLSPNFLIPSF
                     IVSDNSSNVVHAIKGGGFTHVPCFLHCLNIVIQDFFCEHKSIENMLVAARKTCHHFSH
                     SVKARQILQEFQNDHQLPWKNLKQDETGHWISTFYMLKWLLEHCYSVHHSLGRASGVV
                     LTSLQWTLMTYVCDILKPFEEATQRVSVKTTGLNQVLPIIHHLLFSLQRLREDFQVRG
                     ITQALNLVDSLSLKLESDALLSAMLKSKHCILATLLDPCFKNSLEDFFPQGADLETYK
                     QILAEEVCNYMESSPGACQIASSEASGPLVRLGTDSFTSIKEGTSSAGSMDSSAADSV
                     AIGSRSFLFPSAVAVVDEYFKEKYSELSGGDDPLVYWQRKVSIWPALTQVAIQYLSCP
                     MCSWQSECMFTTNSHFHPKQIMNMDFDNIEQLIFLKMNLENVNYDYSTLILSWDPENK
                     AVQNNEKEILP"
ORIGIN      
        1 cccctccccc ccacatccgg tgttcccgaa ctgggatccc cgggtagccc cctaaaagcg
       61 actgtttcgg accctcggaa ggggaactga ctaggttgct ttcttcccgg aatcagtttc
      121 tttagttagc tgaccctccc ttcctagatc agaacaagtg cctggacccg agtttaccta
      181 ctctccttct tctttagggt cccactactt tggagatttt cgcatattcc acatacatag
      241 tcgaattctg gtgtcctatt ccatacccca ttctagttac tctcccgccc aagccctcat
      301 catcgaagtc aagagctaca gggactcttc gttcttgtag gattggtgag accgtaagaa
      361 gaacacccct tagacgccca taatcggtgc ggatccccat ggggaaggct cgttttgttg
      421 acatctacca ggctttggtt ctgaacccag agaaggcggc tgtggagcta gggaatagcc
      481 atgcttttgt agggtaaacg tgttggtatt gaggggaggg gagagggaat ccacggaaaa
      541 ggaatggaag tggtttaaag ctcattttag tttggctact catagaatgt cagcttatga
      601 gttatttaca ggttgtaatg ttgcttcggg ctaaaaatat gaactcttgg tagaaaccgt
      661 aaatgaagga tatagcttat cttgttttga aatttttttc cagttaattt tttttccagc
      721 cacctacatc tttcaaaata tcagaacaga aagggcatag ctagcgttta ctgctaatgc
      781 ctagtatgtg gaatctgatt tagatttcca gaattgactt ttttgggttg tattggcaaa
      841 tcggtcttaa atggtgactg ttgagtgatg cactatgttt aagtgaggtt tcctgaaaat
      901 attcccaaaa tcaaggggaa atcagtgttg ttgtcatgtg gattcattaa aagtacatat
      961 tttaagaact gaaggcgttt cgccagatga agttcttgat tcggcagcaa gaacatgaac
     1021 ctgccatttg gaagacttga cctttagctg ctccagatcc catgactgtg ggaaaatggg
     1081 cctcagttct cttttctata acataaggac actggacgat ttgaatttgg aaagttaaaa
     1141 gaactcctaa agccttgcaa gacatagttt gggaatgttc tccattgctg ccatttttcc
     1201 tccaaaaata acctggcttg gaagtcattg gttgaaaggg aacttgactc cccatagaaa
     1261 ctggagggaa ggtaacacaa gtggagaggg acagctgtat ttctgccaga gtaagaaacc
     1321 caccgaaagg ttctggtacg gattttggag acataaagag aatgagtgta tgtactttga
     1381 gtgtaccagt ttcctcgatc tctcctggca gaagatgcag tgcttttagt gatgctgggg
     1441 ttctggggtg tgtttccatt aattcaaata cagatgaaga cggtgtgcta gagggaaaga
     1501 tggtggcaga aggatcgaat aaagagacaa aattgcctgc taaaaagaaa agaaagaagg
     1561 gtttgcgaat taaggggaaa agacgccgaa aaaaattgat tcttgccaaa aagtttagta
     1621 aggatttggg gtctgggaga cctgttgcag atgcccctgc ttcgttagct tccagtgccg
     1681 ctgagcaaga tgaagaaagt ctttttgatg gcaatataga aaagcaaatc tatctgccta
     1741 gtacccgggc caaaacctcc atcgtgtggc acttctttca tgttgacccc cagtacacct
     1801 ggagagctgt ttgtaacctg tgtgagaaaa gtgtcagcag gggaaagcca ggcagccatc
     1861 ttggcacatc tactcttcaa aggcatcttc aggcaaggca ttctcctcac tggactaggg
     1921 ccaacaagtt tggagtcact aatggggagg aggacttttc cttggatttg tcgttgtctc
     1981 cttcttctcc tggaagcaat ggaagctttg agtatattcc tactgattca ttagatgaaa
     2041 acagaatggg taagaaacgt gataaatcgg catctgatgc cctgagggca aaaagagggc
     2101 gctttctcat caaaagcaac attgtcaagc atgccttaat tcccggaacg agagccaaga
     2161 catctgcagt ttggaatttt ttttatactg atccgcagca catctcaaga gctgtgtgta
     2221 acatatgtaa aagaagtgtg agccgtggta ggccaggttc tcacttagga acttcaacac
     2281 ttcaacgaca tcttcaggcc acacatccca tccactgggc tgttgccaac aaagacagtg
     2341 gtgctattgg gaatggatta gacgagactg agacagagag cggtgatctc ttgaacgata
     2401 ctttgcatgg agagaagtca tcaggcagcc aagatttaac agctgaggac ctcagtgact
     2461 ctgatgatac agatgaacct cctgttttag aggttgaaaa tagatctgag agcccgattc
     2521 ctgttgcaga gcaagataat ctggcgcaca cacaagagag agaaacgacg acagacacac
     2581 attgtgaaga tgcagcctca agtcaaataa gtcaggcagt tattcaaatg attgtggagg
     2641 atctgcatcc ttacaactat ttctctaccc cagcttttca aagatttcta cagattgttg
     2701 ctcccgacta tagattgcca tcagagactt actttttcac caaagccgta cctcagttat
     2761 acgattctgt tagagaaaaa attttcttaa ctttagagaa tgttcaaagc caaaagatcc
     2821 accttactgt tgacatatgg actcatgacc cttccactga ctatttcatt gtgactgtac
     2881 actgggtctc tttggaaact gcatcttctc ccagtaatgg tgggactccc aattttagaa
     2941 agtgggcagt actttgtgtt acaggtttag ccaaagactg tttgataact aacattttac
     3001 aagaattaaa tgaccagatt ggtctgtggc tttctcctaa cttccttatc cctagcttca
     3061 ttgtttctga taattcttct aatgtggtac atgcaatcaa aggtggtggc tttacccatg
     3121 tgccatgctt cctgcattgt ctaaatatag tgattcagga cttcttctgt gagcacaaaa
     3181 gcattgagaa tatgttagtg gctgctagga aaacctgcca tcattttagc cattctgtca
     3241 aggcccgcca gatactacaa gaattccaaa atgatcacca gcttccatgg aagaatctga
     3301 agcaggatga aactggccac tggatttcca ccttttacat gttaaaatgg ctcttagagc
     3361 attgctactc tgttcaccat agtctgggca gagccagcgg agttgtactt acctcccttc
     3421 agtggactct aatgacatac gtttgtgata ttcttaagcc atttgaggag gccacccaga
     3481 gagtgagtgt gaagacaaca ggactgaatc aggtgctacc cataatccat catctcctct
     3541 tttccctgca gagactcaga gaagattttc aagtcagagg tattactcag gccctcaatc
     3601 tggtggacag tttatctttg aaacttgaaa gcgatgcctt actaagtgcc atgctcaaat
     3661 ccaagcattg tatcttggct actttgttag atccttgttt taagaacagt ttggaggact
     3721 tttttcctca aggtgctgat ttagaaactt acaaacagat cctcgcagaa gaggtttgta
     3781 attatatgga atcttcgcct ggggcctgcc agattgcaag ttcagaagca tctggccctt
     3841 tagttagatt agggactgat tcatttactt ctataaaaga aggcacctcc agtgcaggtt
     3901 ctatggatag ttcagccgca gacagtgttg ctattgggag cagaagcttc ttgttcccct
     3961 ctgcagtagc cgtagtagat gaatacttta aagagaagta ttcagagctc tcaggaggtg
     4021 atgacccttt ggtttactgg cagaggaagg tgagcatatg gccagccttg acccaagttg
     4081 ccattcagta tctgagttgc cccatgtgta gttggcaatc tgaatgcatg tttaccacaa
     4141 atagccactt tcatccaaag cagatcatga atatggactt tgataatata gagcagctca
     4201 tatttctgaa aatgaacttg gagaatgtta actacgacta ttctacattg attctgagct
     4261 gggaccctga aaataaggct gttcagaaca atgaaaaaga aatactacct taatttcttt
     4321 tactatttcc tacttaaaat gggcagcttt tgctatatta ttatcttatt gctgttgtta
     4381 tcatatgtag tcatactatt tatcctttaa aaaatagctg ggtgtggtca cagtgccaat
     4441 agtcctggcc attagagaca ctgaggctgg attatgactt tagcacatga gtttgagacc
     4501 agcccaggca acaaaaatga aaaacctggg gaaatcgaaa attacagaaa ggctgaaaac
     4561 tccgcagagg cagtgtaacg atgataagat gaaggttaac tttgaagatt tcacagttgt
     4621 aactcagcat aactaacatc tattaaagtg tcatttgtat cactagcgag aggtcgatgt
     4681 attgagaaca tatggtgcag cgttgaagga cttaggtatt tctggttggt agattgagct
     4741 tccaacatgg aagatttggt tacccaagaa ttatgatttg tataaataca gtgattcagg
     4801 acttctatga gcacagacgt gtttagaatg tgttagtgac tgcattaacg tattctttcc
     4861 cttccctgtt tttaaatttc tttaaaaccc ctgacacagc ttgacatgaa aacccacaac
     4921 attgtttcct atttagtaat tcataattgc ctcacactgg tcagtaaata atgtcagatt
     4981 actgggtatg atggaattgt cttttatatt taaggttgag tctatataaa agggaacatt
     5041 acaaaacaat tagaaaaaaa tgacttttgg tctttgattt gctttttata atgtagtaca
     5101 aaacagggat tatataggtg cctttaaata acctatcagt aaaaaatatt agatgtctgt
     5161 aaaaatcaaa gaacatgatg gaattcagga ttcaagcctc atgaacgtgg caggccccat
     5221 atgagtttcc cagagaatat ttctatagtt tgttcatttt tttttaaagg gtgcttctgg
     5281 tccgtagctc agtattcctc cctgaagtct gggccactgt atttttaact gtgttaggcg
     5341 tcattgctga aatgagcgag ccgtctcagt ggcctgtcag gtgcctttcc actccagagt
     5401 ctgtttctgt gactgagtgg gaggccagaa aatgatgacg tttagtaagt ctattagctg
     5461 tttcagactg aataactaat gggagatccc aatttttcct ttctttcatt ttagatttgg
     5521 ggatattccc tgcccaaaaa attcctggaa aattgactag tattaagtgt gagtaaaagg
     5581 tgtccacttt tttttaagtc ttgattttag ttttgtcttg gatagtattt ggcaagattt
     5641 agcctagaaa gtatgtagtg tttattacat aagaagcaag tggctttgtt actgggctgg
     5701 ttttgaaact catttctgtg tattaaaata acttaaattt ttttatttta aattcttaaa
     5761 tggtaaatgt gaagtgaaat ttcatctccc ccaaatttac cctttaccaa ctggagtgaa
     5821 gtctttagct ctaatcatca attatcagga aacctttgca gggccagcat tgaatgccat
     5881 accagtgatg cttgtgttga tataaaggaa gaagaatagc ttcctttagc atctctgtgc
     5941 ttcgcccgag ctgcttcaga atggctctaa tgctgctctg ccttcttcag ctcgctgccc
     6001 cactctgtag ttcctctgta actatatgct tttacctttt ttggttaaac actccctgac
     6061 gatgactgtt aacagaccat atacattgac atatatgtat ctatcagtac atccatatat
     6121 atggatttct cttcatcttg attttgtggc tgggtaaaat ttaataacat taacttcatg
     6181 gtactttggt ataagagtaa gttcactatt tttatattga acccaaatct aaaggctttt
     6241 atattatatt ttaaaagaat aattacccaa at
//
