LOCUS       NM_001105924            2487 bp    mRNA    linear   ROD 19-AUG-2024
DEFINITION  Rattus norvegicus zinc finger BED-type containing 5 (Zbed5), mRNA.
ACCESSION   NM_001105924 XM_001078332 XM_222107
VERSION     NM_001105924.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2487)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473973.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_222107.4, XM_001078332.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q13"
     gene            1..2487
                     /gene="Zbed5"
                     /gene_synonym="Chchd2l2; Scand3"
                     /note="zinc finger BED-type containing 5"
                     /db_xref="GeneID:288622"
                     /db_xref="RGD:1559988"
     exon            1..131
                     /gene="Zbed5"
                     /gene_synonym="Chchd2l2; Scand3"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..2355
                     /gene="Zbed5"
                     /gene_synonym="Chchd2l2; Scand3"
                     /EC_number="2.3.1.15"
                     /note="zinc finger BED domain-containing protein 5; SCAN
                     domain containing 3; coiled-coil-helix-coiled-coil-helix
                     domain containing protein 2-like 2"
                     /codon_start=1
                     /product="coiled-coil-helix-coiled-coil-helix
                     domain-containing protein 2"
                     /protein_id="NP_001099394.1"
                     /db_xref="GeneID:288622"
                     /db_xref="RGD:1559988"
                     /translation="MPRGSRIRTSRVTPLAGRAPQMRAAPRRAPAAQPPATAAAPSAV
                     GSPAAAPRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGANAEPARPDITYQE
                     PQGAPLQNQQSFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANVDHPPTVDH
                     GEKNVKRRKYNEGFLQYGFTSAITAGTERPQCVICGVVLSAESMKPNKLKRHFESKHS
                     SFANKDTNYFRSKADGLKKARFDTGSKTYKQNVAAVEASYLVALRIARDMKPHTFAEH
                     LLFPVAKDSVRVMIGDEFVTKLSAVSLSNDTVRRRIHDMSADILDQVIQEIKSAQLPA
                     FSIQLDESTDVANCSQLLVYVRYIKDGDFKDEFLFCKPLERTTTALDVFEAVGSFLRQ
                     HKISWESVCGVCTDGAPATLGCQSGFQRLVLNESPKAIGAHCMMHLQTLAMKTLPQDL
                     QDVMKSVLSSVSFIKASSLNSRLFLQLCSDLDAPSKALLLHTEGRWLSRGKVLKRIFE
                     LRDELKMFFNQKAIRQFEALFSDKSELQKIAYLVDIFTILNELNLSLQGQNSSCLDLS
                     EKIQSFQMKLQLWQKKLDENKIYMLPTLSAFFEEHDVEPHKRTTVVTSVKEHLDMLAG
                     EISWYFPNLPDVPFALARNPFTVKAEDVPKTAQDEFIELTNSDAARANFSTMPVTQFW
                     VKCLQSYPILSETVLRLLLPFATTSLCETGFSSLLVIKSKYRSRLVVEDDLRCALAKT
                     TPRISDLVRKKQSQPSH"
     exon            132..384
                     /gene="Zbed5"
                     /gene_synonym="Chchd2l2; Scand3"
                     /inference="alignment:Splign:2.1.0"
     exon            385..535
                     /gene="Zbed5"
                     /gene_synonym="Chchd2l2; Scand3"
                     /inference="alignment:Splign:2.1.0"
     exon            536..2487
                     /gene="Zbed5"
                     /gene_synonym="Chchd2l2; Scand3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caccttcctc cctccttgct ggacgcccgt gggcgtttcc gagtttgttg tgtctgggcg
       61 ctgaacgtag ggacacctag gatgccacgt ggaagccgaa tccgcacttc tcgtgtgacc
      121 cctctggccg gccgggcccc tcagatgagg gctgctccca gaagagcacc agcagctcag
      181 cctccagcca cagctgccgc cccatctgca gtcggctcac ctgctgctgc ccctcggcag
      241 ccaggcctga tggcccagat ggctaccact gcagccggtg tggctgtggg ttctgcggtg
      301 gggcacaccc tgggtcacgc catcactggg ggcttcagcg gaggggctaa tgctgagcct
      361 gcgaggcctg acatcactta ccaggagcct cagggagccc cgctgcagaa ccagcagtct
      421 tttggacctt gctctctaga gatcaagcag tttctggagt gtgcacagaa ccagagcgat
      481 gtcaagctct gtgagggctt caatgaggtg ctgcggcagt gcaggattgc aaatgtggac
      541 catcccccga cagtggatca tggagagaag aatgttaaaa gaagaaaata taacgagggc
      601 tttttacagt atggttttac ctcagccatc acagcgggga ctgagagacc gcagtgtgtc
      661 atctgtgggg ttgttctctc ggcggaatct atgaagccca acaaactgaa acgccatttt
      721 gaaagcaagc attcgagctt cgccaacaag gataccaact atttcagaag caaagctgat
      781 ggactcaaga aagccagatt tgacactggc agcaagacct acaaacagaa cgtggcagcc
      841 gtggaagctt cctatttggt ggccctcaga atcgccagag atatgaaacc tcacactttc
      901 gctgagcatt tactgttccc agtggccaaa gacagtgttc gagttatgat tggagacgaa
      961 tttgttacga aattgagtgc ggtttcctta tctaacgaca ccgtccgaag aagaatccac
     1021 gacatgtctg ctgatatcct cgatcaggta atccaggaaa ttaaatcagc tcaacttcca
     1081 gcgttcagta tccagctcga cgaatcgaca gacgttgcaa actgttcaca gttactggtt
     1141 tatgtgaggt atattaaaga tggggacttt aaagatgagt ttcttttctg caaacctctt
     1201 gaaaggacaa ctactgccct tgatgtattc gaggcagtcg gctcatttct gagacagcat
     1261 aagatctcct gggaaagcgt ctgtggtgtt tgcacagatg gcgctccagc cacgctagga
     1321 tgtcaatctg gtttccagcg tttggtccta aatgagtcac caaaagccat tggagctcac
     1381 tgcatgatgc atctgcagac actagcaatg aagacactgc cacaggactt acaggacgtc
     1441 atgaaaagtg tcctgagttc cgtcagtttc ataaaggcga gctctttgaa cagtcgactg
     1501 tttctgcagc tatgcagtga tttagacgct ccgagcaaag ccctcctact tcacactgaa
     1561 gggagatggc tgtcaagagg aaaagttcta aaacgtattt ttgagcttcg tgacgagctc
     1621 aaaatgtttt ttaatcagaa agccatacgg cagtttgagg cgcttttcag tgataaaagc
     1681 gaactgcaga agatagctta cttggtcgac atctttacca tcttgaacga gttgaattta
     1741 tcactgcaag gacagaattc atcatgcctc gatttgtcgg aaaagatcca atcattccaa
     1801 atgaaacttc agctctggca gaagaaactg gacgaaaata aaatttacat gttgcctacc
     1861 ttatccgctt tctttgagga acatgacgtt gaaccgcaca aaaggacgac cgtggtgact
     1921 tccgtgaaag aacacttgga catgcttgcc ggtgaaattt cttggtactt tcccaatcta
     1981 cctgacgtcc cgtttgcact tgccagaaac ccattcacag tcaaagctga agatgtcccc
     2041 aagacagcac aggacgagtt catcgagctt acaaacagtg atgcggcgag agccaatttc
     2101 tccacaatgc cagtgacaca gttctgggtc aagtgtttgc agtcataccc gattctgtct
     2161 gagacggtgt tgcgactcct ccttccattc gcaacaacat ctctttgtga aacagggttc
     2221 tccagcttgt tggtcatcaa gtccaagtac agaagtaggc ttgtcgtgga agacgacctc
     2281 cggtgtgctc tcgcaaagac taccccaaga atttctgatc tggtgagaaa gaagcagtct
     2341 caaccctcac actgatgttg gctttttaca aacagtgttc tgaaatgtag caatgtggtt
     2401 tacctcattc tagtaagact gttacccgtg ccacactgtg cttcaagaca aaatttcata
     2461 tactcgtcat tagtaataaa tatttcc
//
