LOCUS       XM_039088744             429 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger, BED-type containing 2
            (Zbed2), partial mRNA.
ACCESSION   XM_039088744
VERSION     XM_039088744.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               JACYVU010000222.1  34044302-34044472   c
            172-172             "N"                1-1
            173-258             JACYVU010000222.1  34044216-34044301   c
            259-336             JACYVU010000222.1  34043680-34043757   c
            337-337             "N"                1-1
            338-429             JACYVU010000222.1  34043588-34043679   c
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..429
                     /gene="Zbed2"
                     /note="zinc finger, BED-type containing 2; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:120095578"
                     /db_xref="RGD:9378503"
     CDS             <1..429
                     /gene="Zbed2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:127..129,aa:OTHER)
                     /transl_except=(pos:349..351,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger BED
                     domain-containing protein 2"
                     /protein_id="XP_038944672.1"
                     /db_xref="GeneID:120095578"
                     /db_xref="RGD:9378503"
                     /translation="GPHPKYAICHLCVRQVSHGLRVTMGTTALSKHLKSTGREELDXG
                     GYIPMGQHHAPASXLPTNMKVDWSKLLEQVDALTLWASQREKEVLRMERTIEWWERSV
                     RGKEQALEEEXKMKXGRAAKELCLQPEKGLPAATHPIHSV"
ORIGIN      
        1 gggccccatc ccaaatatgc tatctgtcac ttatgtgtca ggcaggtgag tcatggcctg
       61 agggtcacca tgggtaccac tgccctgtca aagcatctga agagcactgg cagagaggag
      121 ttggattaag gtggctacat tcccatgggg cagcaccatg ctcctgcctc tnggctccct
      181 acaaatatga aggttgactg gagcaagctc ctggagcagg tggatgccct cactttatgg
      241 gccagccaga gggaaaagga agtgctaagg atggagagga ccatagaatg gtgggagagg
      301 agtgtgagag gaaaggaaca agcattggag gaagagngga agatgaagta ggggagagct
      361 gcgaaggagc tatgcctgca gccagaaaag ggcctgcctg cagcaacaca tcccatccat
      421 tctgtctaa
//
