LOCUS       NM_001029922            2245 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger, B-box domain containing (Zbbx),
            mRNA.
ACCESSION   NM_001029922 XM_342262
VERSION     NM_001029922.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2245)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Feb 28, 2022 this sequence version replaced NM_001029922.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.12556.1,
                                           SRR26360181.1077368.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               JAXUCZ010000002.1  162221975-162222127 c
            154-202             JAXUCZ010000002.1  162219391-162219439 c
            203-312             JAXUCZ010000002.1  162218066-162218175 c
            313-408             JAXUCZ010000002.1  162215016-162215111 c
            409-558             JAXUCZ010000002.1  162192440-162192589 c
            559-733             JAXUCZ010000002.1  162190781-162190955 c
            734-854             JAXUCZ010000002.1  162182417-162182537 c
            855-964             JAXUCZ010000002.1  162175612-162175721 c
            965-1065            JAXUCZ010000002.1  162175167-162175267 c
            1066-1145           JAXUCZ010000002.1  162173929-162174008 c
            1146-1285           JAXUCZ010000002.1  162172109-162172248 c
            1286-1383           JAXUCZ010000002.1  162168790-162168887 c
            1384-1534           JAXUCZ010000002.1  162155254-162155404 c
            1535-1657           JAXUCZ010000002.1  162152116-162152238 c
            1658-1915           JAXUCZ010000002.1  162143549-162143806 c
            1916-2051           JAXUCZ010000002.1  162136251-162136386 c
            2052-2245           JAXUCZ010000002.1  162134252-162134445 c
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q32"
     gene            1..2245
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /note="zinc finger, B-box domain containing"
                     /db_xref="GeneID:361964"
                     /db_xref="RGD:1308632"
     exon            1..153
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            154..202
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            203..312
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     CDS             232..2178
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /codon_start=1
                     /product="zinc finger B-box domain-containing protein 1"
                     /protein_id="NP_001025093.2"
                     /db_xref="GeneID:361964"
                     /db_xref="RGD:1308632"
                     /translation="MAHSTGSENPKTKRKVCGQCENKAALLVCLECGEDYCSGCFARM
                     HQKGALKFHRTTLLQPKCQIISNVLDAAHQFIKEVNPPNEGKNPTEASSKSQQKPKAL
                     LLQKSSEVETTATEGGKDGNPRYKTMWEMPFDEEASAQSFREALTQWRAGHQEDNKEE
                     DVHAKKPESVEECEVQTNLKIWAEPINIEFTEDSLSYMEKLWLKKYRRTPLEQLHTML
                     PNTFPHPREAIAEALCTQKENDSDSDVEEIKVKYPPLFMPAEKLKVERPPPSLTIVEL
                     DSTHGAEFEDPGVAVPYRVELADSESQLSSTFPDYQTCLPGENDIHHHLIFNKGKADL
                     LSMCLRTNSGHHKDELKEEISSQDINTSLECSKQNERSNFEDSKTTKPPLLRKVALRR
                     KPVNERYQGPKKFFPADKNERLNALPSSSIKGSHSCSEITSTVSEDKLWVPVSSLSGC
                     AGNTDVLKDQQSDENPLPHVQQQKTGQKSQRPSTANIPVSNSDQKDTSCLLSSYSRSK
                     SADPQFPSRAASEISEIEYIDVTEQNELFGGNTVDQQALDTLEKELNILRNPADPSEE
                     SHSIPSEQFQAFNDNFLTLSRMSKDLLEMPCESEPSGTESSTPGRNSEMQPLLSLGDC
                     STDEEEEDFLDKQNVITLPWAKRA"
     exon            313..408
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            409..558
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            559..733
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            734..854
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            855..964
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1065
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1145
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1285
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1383
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..1534
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1657
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..1915
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            1916..2051
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
     exon            2052..2245
                     /gene="Zbbx"
                     /gene_synonym="RGD1308632"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatcatgctt gacactgaga acatctgtgt ttgggacttt gaaggtatgg acatttagaa
       61 tgacgtctag ctgcaagatt tggttacaat ggtggggcag ctagaggaac ttaggtgcca
      121 aagtgttgga ggatcttcag tgctggatgt cagctctctg ctggaaaagt gaaattgaag
      181 ttacttaagg aagagattca agctccagca aaacaacaag ttagttacaa aatggcacat
      241 tctactggaa gcgaaaaccc aaagactaaa agaaaagttt gtggacagtg tgagaacaaa
      301 gctgctctcc ttgtatgcct ggaatgtggt gaagactatt gttcaggctg ctttgctaga
      361 atgcaccaga agggggcact gaagttccac agaacaactc tattacagcc aaaatgtcaa
      421 atcatatcca acgtgttaga tgctgctcat caatttataa aggaagtaaa tccacccaat
      481 gaaggaaaaa atcctacaga agcatccagt aaaagtcagc agaaacccaa agccctgctt
      541 cttcagaaga gctctgaggt agaaactaca gccacagaag gagggaaaga tggaaatcca
      601 aggtacaaga ccatgtggga aatgcctttt gatgaagaag catctgctca gtccttccga
      661 gaagccttaa cacagtggag agctgggcat caggaggaca acaaggagga ggatgtgcat
      721 gcaaaaaaac cagaatcggt ggaagaatgt gaagtacaaa ctaatttgaa aatttgggca
      781 gaaccaatta atatcgaatt cacagaagac agtctgtcgt acatggaaaa attatggctt
      841 aaaaaataca gaagaactcc cctggagcaa cttcatacca tgctaccaaa tacgttccca
      901 catccgcgtg aagccattgc agaggcgctg tgcactcaga aagaaaatga ctctgatagt
      961 gatgttgaag agatcaaagt aaaatatcca ccccttttta tgccagcaga gaaattgaaa
     1021 gtagaaagac ctccaccatc tctaacaata gtagaactgg atagtactca tggagcagaa
     1081 tttgaagacc caggggttgc tgtgccttat agagttgaat tggctgactc agagagtcaa
     1141 ctaagttcta catttccgga ttatcagact tgcttaccag gtgaaaatga tatccatcac
     1201 caccttattt tcaacaaggg aaaagcagac ctcttaagta tgtgtttgag aacaaattct
     1261 gggcaccaca aggatgagtt aaaagaggag atttcatctc aagacatcaa cacatcattg
     1321 gaatgcagta aacaaaatga gaggtcaaac tttgaagatt caaagactac aaaaccacca
     1381 ctgttacgaa aagtagccct cagaagaaaa cctgtaaatg aacgctatca aggacctaag
     1441 aagttctttc ctgctgataa aaatgaaaga ctaaatgccc tcccatcatc aagcataaaa
     1501 ggcagtcatt catgttctga gataacatcc acagtttcag aagacaagct gtgggtccct
     1561 gtgagcagct taagtgggtg tgctggtaat accgatgtct tgaaggatca gcagagtgat
     1621 gaaaatccac ttcctcatgt gcaacagcaa aagacaggcc agaaatcaca gagaccatca
     1681 acagcaaata ttcctgtttc caactctgat caaaaagaca ccagctgcct tttatcctct
     1741 tatagccgat caaagagtgc agaccctcaa tttccatcca gagctgcttc tgaaatttca
     1801 gaaattgaat acattgacgt cactgaacag aatgagcttt tcggaggcaa cactgttgat
     1861 caacaagctt tagacacttt ggagaaagaa ttaaatatac tgagaaaccc tgcagatcct
     1921 tcagaagaat ctcacagcat accctcagaa cagtttcagg cattcaatga caattttctg
     1981 actttaagtc ggatgtccaa agacctcctt gagatgccat gtgagagtga gccctctgga
     2041 actgagtcca gcactcctgg aagaaatagt gaaatgcagc ctttgctgtc acttggggat
     2101 tgcagcacag atgaggaaga agaagatttt cttgacaagc agaatgtcat tacactacca
     2161 tgggcaaaga gggcttaaca gttcattact ttccattctg tactcaaaat aaaccaaaca
     2221 actgagtgat taacttttgc aggta
//
