LOCUS       XM_039097250            6311 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus YTH N6-methyladenosine RNA binding
            protein C2 (Ythdc2), transcript variant X1, mRNA.
ACCESSION   XM_039097250
VERSION     XM_039097250.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 12, 2024 this sequence was replaced by
            NM_001427202.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6311
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6311
                     /gene="Ythdc2"
                     /note="YTH N6-methyladenosine RNA binding protein C2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 15 ESTs, 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 148 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:307446"
                     /db_xref="RGD:1563192"
     CDS             31..4335
                     /gene="Ythdc2"
                     /codon_start=1
                     /product="3'-5' RNA helicase YTHDC2 isoform X1"
                     /protein_id="XP_038953178.1"
                     /db_xref="GeneID:307446"
                     /db_xref="RGD:1563192"
                     /translation="MSRPSSVSPRPPAPSGGGTGGGGGGPASCGPGSGGRAKGLKDIR
                     IDEEVKIAVNIALERFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANR
                     YLTVKKKDGSETAHAMMTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAV
                     EAENREMSKTSGRLNNGIPQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLI
                     VGETGSGKTTQIPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTI
                     GYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLT
                     KLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTG
                     YTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFKPESQRQRAVASVSEEYDLLDDGG
                     DAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDVDAFAQVFHLILTENVSVDYRHS
                     ETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWMALDWAKHFGQTEIVDLLESY
                     SASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYNICHSC
                     DAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHSNMQTSDQKKVLKNPP
                     AGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQR
                     KGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCTIADFL
                     MKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLK
                     CLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKA
                     RSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENW
                     AVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAA
                     IQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLTSNALQEPSSFRADG
                     IPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPS
                     KPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
                     SSADTEFSDGSTAAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDS
                     SSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSN
                     ERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWI
                     RKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQLLQLWERLPLGEKTTSD"
ORIGIN      
        1 cccacgcgga gcgagcttct cctcagggcc atgtccaggc cgagcagcgt ctcgccgcgt
       61 ccgccagctc ctagcggagg cggcaccgga ggcggtggcg gcggcccggc ttcgtgtggt
      121 cctggaagcg gtggccgggc caaaggcctc aaagacattc gtatcgacga ggaggtgaag
      181 atcgctgtca acattgctct ggagcgcttc cgatacggtg accagagaga aatggaattt
      241 ccttcttctc tgaccagtac ggaaagagct tttattcacc gactaagtca atctcttggt
      301 ttagtttcta aaagtaaagg aaagggagca aatagatacc taactgtgaa gaagaaagat
      361 ggatcagaaa cagctcatgc aatgatgacc tgtaatttga ctcataatac aaaacatgct
      421 gttaggagcc taattcagag atttcctgtc accaataaag aacgtactga acttctacct
      481 aaaacagaaa gaggaaatgt gtttgcagtt gaagctgaaa accgagaaat gagcaagaca
      541 agcgggcgac tcaacaatgg catacctcaa gttcctgtga aaaggggaga gtctgaattt
      601 gactcattca ggcagtcttt accagttttt gagaaacaag aagaaattgt taaaataatt
      661 aaggaaaata aagtagtttt gattgtagga gaaactgggt ctggaaagac cacacagatt
      721 cctcagttcc tgttagatga ttgctttaaa aatggcatcc cctgccgaat attttgtact
      781 caaccgagac gattagcagc tattgctgtg gctgaaagag ttgctgcaga gagaagggaa
      841 aggattggtc aaacaattgg ttatcagatc cgattagaaa gcagggtttc accaaagaca
      901 cttctgacat tttgcactaa tggggtattg cttcgtacat tgatggcagg tgatagcaca
      961 ttgtcaactg tgactcatgt tattgtggat gaagtgcatg aaagggatcg attcagtgat
     1021 tttttactta caaagttaag agatttgttg caaaagcacc caactttgaa attaattctt
     1081 tctagtgctg ctttggatgt gaatctcttc ataagatatt ttggaagttg tccagtgata
     1141 tatatacagg gaagaccatt tgaagtaaaa gaaatgtttc tggaagatat tttaagaact
     1201 accggatata caaacaaaga aatgttaaag tacaaaaagg aaaagcaacg agaggaaaag
     1261 caacagacca ccctcacaga atggtactca gctcaagaga atactttcaa gcctgaatct
     1321 cagagacaga gagctgttgc tagtgtgtct gaggagtatg acttattgga tgatggaggt
     1381 gatgctgtct tcagtcagct gacagaaaaa gatgtgaatt gccttgaacc atggttaatc
     1441 aaggaaatgg atgcctgcct ttctgacata tggctacata aagatgtcga tgcttttgct
     1501 caggtctttc atcttatttt aactgaaaat gttagtgttg attataggca tagtgagacc
     1561 agtgcaacag ctctgatggt tgcggcagga cggggtttta cgagccaagt agagcaatta
     1621 attagtatgg gagccaatgt acacagtaaa gcatcaaatg gctggatggc tttagattgg
     1681 gctaagcact ttggacagac tgaaattgtg gatcttctag aatcttacag tgcttcattg
     1741 gaatttggaa atctagacga aagttccttg gttcaaacca atggaaatga cctcagtgca
     1801 gaagacagag agctgttgaa agcttaccat catagttttg atgatgaaaa ggtagacttg
     1861 gatttgatca tgcatcttct atataatatc tgccatagtt gtgatgctgg tgcaatatta
     1921 atttttctac ctggatatga tgaaattgtt ggtttgaggg atcgcatcct ctttgatgac
     1981 aagcgttttg ctgacaatac acatagatat caagtcttta tgcttcattc aaatatgcag
     2041 acatctgatc aaaagaaggt attaaaaaat ccacctgcag gtgtccgaaa aataatcctt
     2101 tccaccaata ttgctgaaac aagcatcact gtcaatgatg ttgtctttgt tatagattct
     2161 ggtaaggtga aagagaaatc ctttgatgca ctgaattttg ttacaatgtt aaaaatggta
     2221 tggatttcca aagctagtgc catacagcgc aaaggcagag ctggacgatg tagacctgga
     2281 atttgtttcc gactgtttag tagacttcga tttcagaaca tgctggaatt tcagactcca
     2341 gaactcttga gaatgccatt gcaggagctt tgtttgcata ccaagctgtt agccccagtc
     2401 aattgtacca ttgctgactt ccttatgaaa gctcctgaac cacctccagc cttaattgta
     2461 agaaacgctg ttcagatgct caagacaata gatgcaatgg atgcatggga agatctgact
     2521 gaacttggct atcatttggc tgatttgcca gtagaaccac atcttgggaa aatggtcctg
     2581 tgtgctgttg ttttaaagtg tctggacccc atccttacaa tcgcctgcac gctagcttat
     2641 cgtgatcctt ttgtactgcc tacccaggcc tctcaaaaac gtgcagctat gctttgtagg
     2701 aaacgtttca cggcagggac tttcagtgac cacatggcac ttctgagagc atttcaggca
     2761 tggcagaaag cacgaagtga tgggtgggag cgagcctttt gtgaaaagaa ttttctttca
     2821 caagctacta tggaaatcat tataggcatg agaacacagt tgcttggtca gcttagagca
     2881 tcaggttttg ttagagcacg aggtggtggt gacattcgag atgttaacac aaactccgag
     2941 aattgggctg ttgttaaagc tgcattggta gcaggcatgt atcctaattt agtccatgtg
     3001 gacagagaga atgtagtatt gacagggcca aaggaaaaaa aagtacgctt tcatcccact
     3061 tcagttctca gtcagcctca gtacaaaaag attcctccag ccaatggtca ggctgcagca
     3121 attcaggcat tgcccacaga ttggcttatt tatgatgaaa tgaccagagc ccatagaatt
     3181 gctaatatca gatgttgttc agcagtgaca cctgttactg ttctggtgtt ctgtggacca
     3241 gccagactga caagtaacgc tcttcaggaa ccttcatcct ttagagcgga tggcattccc
     3301 aatgatagca gtgacagtga gatggaagat agaactaccg ccaatttggc tgctttgaaa
     3361 cttgatgaat ggcttaactt caagttagag ccagaggctg ccagtttatt gctacagctc
     3421 agacagaagt ggcatagctt gtttttacgc cgaatgagag cgccatctaa accttggtct
     3481 caagtcgatg aagctaccat acgagcaatt atagctgtat taagcactga agagcagtct
     3541 gctggtttac agcaaccatc tggaattggc cagaggccaa gacccatgtc ttcagaagaa
     3601 cttcctttgg cttcatcctg gagatctaat aatagtagga aaagttcagc tgacactgag
     3661 ttttctgatg gatctactgc tgcagaaaga gtactgatga aatctccatc tcctgcctta
     3721 catccacctc agaagtacaa agatagaggc attttacatc ctaaacggag cacggatgac
     3781 cggtcagatc aatcgtctgt gaaatccaca gacagcagca gttacccaag tccttgtgct
     3841 agcccctctc ctccatcctc aggaaagggc tcaaaatctc cttcaccaag accaaatatg
     3901 cctattcgtt acttcataat gaagagtagc aatctgagaa accttgaaat ttctcagcag
     3961 aagggtatct ggtctacaac ccctagtaat gagcggaagc taaatcgagc gttttgggag
     4021 agcagcatgg tttacttggt attttctgtt caaggatctg gacatttcca gggattttct
     4081 aggatgtctt ctgagatagg aagggagaag agccaagact gggggtcagc tggactaggt
     4141 ggagtattca aagtggaatg gatacgcaaa gaaagccttc cctttcagtt tgcacaccat
     4201 ttactcaatc cttggaatga caacaagaaa gtacagataa gcagagatgg gcaggagcta
     4261 gaacctctgg ttggggaaca gttactccag ttatgggagc gtctcccatt gggggaaaaa
     4321 actacatctg attgatattc agaactcctg gctatggaag agcattgtgc ctgttgtagc
     4381 tacagaatgc actgattttt ctgaaaacct tgatgaagtg ttgtatgcca tgagtggatt
     4441 tatagcataa agtattcctt cagaatcatc atctgtatga atagaggaaa agataattta
     4501 aatttttgta gtggttttta ggaaattatt atataatgtt tgttaattat ctgtttcaga
     4561 tgaacaaaat agcaattttg gtatttgata caacagcact taatttaatt taatttgaat
     4621 gtaagcattt ctttaaaata ttcagttaat gactgttgat gccaaatttt tttctttttg
     4681 ttttatccag atagggtttc tttctttgtg tagcctcaac tgtcttggaa ctagctctat
     4741 aagaccaggg tgacctcgaa ctcacagata tctgcccgct tttgcctcct gactgctgga
     4801 attaaagcct tgcaccacca ctgcctgata tgccaaactc ttattgttga ctttttggtt
     4861 atgagcctat cctttaatgg ctgagtcatc tctccagcct tactttttaa ttcaggaaag
     4921 tcatagatat atcactacat ctaagaacca ttctggaaga ttcagctctt aggttttttc
     4981 attaaaacaa aaaaaataag ccaacacact aaaactttag attatctctt atagaacaag
     5041 tgtacataag ggctattcat tgatattttt aacctgagat acagtaaaga aaacagaagg
     5101 agtgctattt tctctgatta cagaatgaga taaaatctga agaaaggtaa tttctctcta
     5161 cttttgatga gatcagtgct taatttcatt cctaatcttg tctcttttaa tcttacgtac
     5221 aatatattca tccttttttt tttaattcta tgaagcaact ttcacataac tattactatt
     5281 atgacctctt tgttttgcta cagaaaccca atttaaaaca actaaaattt atggaaattc
     5341 atacaagttt taaaaaatgc tcagcagtta ttgatagctt gggtacagta tatctttgaa
     5401 actaaagctc tcacaaccca taattcttta tgtctttttc caattatttt ttagtctttt
     5461 tctctcacct attttatgtc aatggggcat ttatttttct aagtctatgt taactaagtc
     5521 tcatgtctct ttaccatctc agagttactt tctttgattt ctttaccacc attggttaca
     5581 ggttttgttt gtttttttgt ttttttttct tttttgatac tctttgaaaa taaagtagaa
     5641 gtgtttatcc ttaaacatca gacacgtctt tgttactgaa ttctaaatgg agaggcttga
     5701 tggtactttt catagcattt gaaaataaat ttaatttaaa gatgaaaaag aaaacaaatg
     5761 tcttgttcag tatttgaggg caaagatgtg aaaaatcatg gattggcatg aagccttgag
     5821 aactcttcta ctttctctga gaaaatgtat tgatgcattg ctttaagata ccagctagaa
     5881 cttttgccta tattagaaat tgtgatgtat atatacatat atagacatat atacatatat
     5941 atatgatata tgaatgcata tatgtacaca cacacccact cattcataca ctttgagaca
     6001 tacctgtata gctgagccaa agtaaattat gcttcattgt atgtgtatta catttctttt
     6061 gaaacttaca attttcctga aaatgtatac attttttaag gtatatatgt agaggttttc
     6121 aggattctaa atttggaaga acttttaaag aaataaaact tgtttaaatg tttcttgttt
     6181 tgtaatatct aaccttgtaa ataaatgatg ggcttgttgg tagagtggat ataatttgaa
     6241 tgtaattaaa gtactgtctt ttgaagaaat gaattttaaa catacttatt aaatgaaata
     6301 ctataaagtt a
//
