LOCUS       XM_006254369            2506 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus YME1-like 1 ATPase (Yme1l1),
            transcript variant X1, mRNA.
ACCESSION   XM_006254369
VERSION     XM_006254369.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006254369.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006254369.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2506
                     /gene="Yme1l1"
                     /gene_synonym="FtsH1"
                     /note="YME1-like 1 ATPase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 55
                     ESTs, 3 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 94 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:114217"
                     /db_xref="RGD:620764"
     CDS             149..2278
                     /gene="Yme1l1"
                     /gene_synonym="FtsH1"
                     /codon_start=1
                     /product="ATP-dependent zinc metalloprotease YME1L1
                     isoform X1"
                     /protein_id="XP_006254431.1"
                     /db_xref="GeneID:114217"
                     /db_xref="RGD:620764"
                     /translation="MWRTWVTVPLSHLINAFHSPKNISVSVNTSASPKQHRDTVAEHE
                     APSSEPVLNLRDLGLSELKIGQIDKLVENLLPGFYKDKRVSSCWHTSHISAQSFFENK
                     YGHLDMFSTLRSSSLYRQHPKTLQSICSDLQNFPVFIQSRGFKTLKSRTRRLQSTSER
                     LAEAQNIAPSFVKGFLLRDRGTDLESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQAL
                     TQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEH
                     VKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADV
                     PFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYS
                     RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTE
                     ILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEF
                     SKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGH
                     VSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM
                     VTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNL
                     AEALLTYETLDAKEIQIVLEGKKLEVR"
ORIGIN      
        1 tactaagact ttaatgtagc tcgagtctgg tggggtccaa gtcccagcca agatctgcag
       61 ttctctcttc ttccgcgtga gccagaagcc aggtcgactg ttaaagcaat ggctagggat
      121 gaggtgtgga agctagcgga gtcacagaat gtggagaacc tgggttacag ttcctctcag
      181 tcatctcatc aatgccttcc attcaccaaa aaatatatcc gtttccgtca atacatctgc
      241 ttctccaaaa cagcatcgag atacagttgc tgagcatgaa gctcccagta gtgagcctgt
      301 gcttaattta agggaccttg gattatctga attgaaaatt ggacagattg ataaactggt
      361 agaaaattta cttcctggat tttataaaga caaaagagtt tcttcctgtt ggcatacatc
      421 tcatatctcg gcacagtcct tttttgaaaa taaatatggt cacttagata tgttcagtac
      481 attacgttcc tctagcttgt acaggcaaca tccaaaaact cttcagagca tttgttcaga
      541 tcttcagaat tttccagttt tcatacagtc tcgtggtttc aaaactttga agtcaaggac
      601 acggcgtttg caatctactt ctgaaagatt agcagaagca cagaatatag caccatcatt
      661 tgtgaagggg tttcttttgc gggacagagg aacagatctt gagagtttgg acaaacttat
      721 gaaaactaaa aacatacctg aagctcacca agatgcattt aaaactggtt ttgcagaggg
      781 ttttctcaaa gctcaagctc ttacacagaa gaccaatgat tccttaaggc gaactcgtct
      841 gattctcttt gttttgctcc tgtttggcat ttatggactc ttaaaaaatc catttttatc
      901 tgtgcgcttc cggacaacta caggacttga ttctgcagta gaccctgtcc agatgaaaaa
      961 tgtcactttt gaacatgtta aaggggtgga ggaggccaaa caagaattac aggaagtggt
     1021 tgaattcttg aaaaacccac agaagtttac tgtgcttgga ggtaaacttc ccaaaggaat
     1081 tctcttagtg gggccaccag gaacagggaa gacccttctt gcccgagctg tggcaggaga
     1141 agctgatgtt cctttttatt atgcttctgg atcagaattc gatgagatgt ttgtgggtgt
     1201 aggagccagc aggatcagaa atctttttag agaagcaaaa gcaaatgctc cttgtgttat
     1261 attcattgat gaattggatt ctgttggtgg gaagagaatt gaatctccaa tgcatccata
     1321 ttcaaggcag actatcaatc aacttcttgc cgaaatggat ggtttcaaac ctaatgaagg
     1381 agtaatcatt ataggtgcca caaatttccc agaggcatta gataatgcct taatacgtcc
     1441 tggtcgtttt gatatgcaag ttacagttcc aaggccagat gtgaagggtc gtactgaaat
     1501 tttgaaatgg tatcttaata aaataaagtt tgataaatct gttgatccag aaatcatagc
     1561 tcgaggaact gttgggtttt ctggagcaga gttggagaat cttgtgaacc aagctgcatt
     1621 aaaggcagca gttgatggaa aagaaatggt taccatgaag gaactagagt tttccaagga
     1681 taaaattcta atgggaccag aaagaagaag tgtggaaatt gataacaaaa acaaaactat
     1741 aacagcctat catgaatctg gtcatgctat tattgcatat tacacaaagg atgcaatgcc
     1801 aatcaataaa gctacaatca tgccacgagg gcccacactt ggacatgtat cactgttgcc
     1861 tgagaatgac agatggaatg aaactagagc ccagctgctt gcacagatgg atgttagtat
     1921 gggaggaaga gtggcagagg aactcatatt tggaaccgat catattacaa ctggtgcttc
     1981 tagtgatttt gataatgcaa caaaaattgc aaagaggatg gttaccaaat ttggaatgag
     2041 tgaaaagctt ggagttatga cctacagtga tacaggaaag ctaagtcctg aaactcaatc
     2101 ggccattgaa caagaaataa gaatccttct acgggaatca tatgaacgag caaaacatat
     2161 cctgaaaaca catgcgaaag aacataagaa cctggccgag gcgttgctga cctatgagac
     2221 tttggatgcc aaagagattc aaattgttct tgaggggaag aaattagaag tgagatgata
     2281 actctgttga tattgctggt tttattacaa gaatatactt agtcctacag tctcctttgc
     2341 aacacttcca acccccactt ctgacttggt atctaattcc aggatgtgaa acactttgtc
     2401 agtcttctgt tccattattt gattttggtt attcctgtgg tgatactcat tggagattag
     2461 taacctataa caagtacacg aaaagataaa taaagagctg tcagga
//
