LOCUS       NM_001109673            2096 bp    mRNA    linear   ROD 17-JUL-2023
DEFINITION  Rattus norvegicus YJU2 splicing factor (Yju2), mRNA.
ACCESSION   NM_001109673 XM_001061924 XM_576700
VERSION     NM_001109673.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Zhan X, Yan C, Zhang X, Lei J and Shi Y.
  TITLE     Structure of a human catalytic step I spliceosome
  JOURNAL   Science 359 (6375), 537-545 (2018)
   PUBMED   29301961
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169032.1.
            
            On or before Sep 5, 2008 this sequence version replaced
            XM_001061924.1, XM_576700.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169032.1, BC129098.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..2096
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /note="YJU2 splicing factor"
                     /db_xref="GeneID:501285"
                     /db_xref="RGD:1589601"
     exon            1..58
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..976
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /note="coiled-coil domain-containing protein 94;
                     coiled-coil domain containing 94; YJU2 splicing factor
                     homolog"
                     /codon_start=1
                     /product="splicing factor YJU2"
                     /protein_id="NP_001103143.1"
                     /db_xref="GeneID:501285"
                     /db_xref="RGD:1589601"
                     /translation="MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCK
                     TCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEH
                     GATRNFQAEKLLEEEEKRMQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDL
                     NQRQAHVDFEAMLLQHRLSQEQWQQQQEEEDERETVALLEEARYRRLLDDSDSEDEAP
                     PSQPQAAARPNPTAILDEVPKTKRKAEGLCRKAQLAGLVIPKKAKTEANRVSEQVRVP
                     TTGAPESRKVANPAPQTPGASSLSQLGAYGDSEDSDS"
     exon            59..159
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            160..304
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            305..439
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            440..621
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            622..742
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            743..869
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            870..2073
                     /gene="Yju2"
                     /gene_synonym="Ccdc94"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atttcttctc ttgttcgttg aacaggaagc gaagatgtcg gaacggaaag ttttaaacaa
       61 atactaccca cctgactttg acccatcgaa gatcccgaaa ctcaagttac ccaaggaccg
      121 gcagtacgtg gtgcggctga tggccccatt caacatgagg tgtaagacat gtggagaata
      181 catctacaag gggaagaagt tcaatgcacg aaaggaaaca gtccagaatg aggcatacct
      241 gggcttgcca atcttccgtt tctatatcaa gtgcacacgc tgcttggccg agatcacctt
      301 taagacagac ccagagaaca cagactacac catggagcat ggggccacgc gcaacttcca
      361 ggctgagaag cttctggagg aggaggaaaa gcgcatgcag aaggagcgtg aggatgagga
      421 gctgaacaac cccatgaagg tcctagagaa ccgtacaaag gactctaagc tggagatgga
      481 agtgctagag aacctacaag agctaaaaga cctgaaccag cggcaggccc acgtggactt
      541 tgaggccatg ctgctacaac accgcctatc tcaggagcag tggcaacagc agcaggaaga
      601 ggaagacgag cgtgagacag tggccttgct ggaggaggct cgttatcgaa ggcttctgga
      661 tgactctgac tcagaggatg aggctccacc ttcccaacca caggcagctg caagacccaa
      721 ccccacagcc attcttgatg aggtaccaaa gaccaagagg aaggcagagg gcctgtgcag
      781 gaaagcccag ttggcaggct tggttatacc aaagaaggca aagacggaag ccaaccgggt
      841 ttcagagcag gtccgggtgc ccaccactgg tgcccccgag agcaggaagg tggccaaccc
      901 tgcaccccag acacctggtg cctcctccct gagccagctc ggtgcatatg gggacagtga
      961 ggacagtgac agctgagcat cagtgatgct caccgtggca tcatagacca agaaatgaag
     1021 atggtatcaa gcaaacacct tcagccaagc ctcaggacca ttctaccatg ggtgggcagg
     1081 gtgtggagaa gcactgtccc caggcacccc aggacagaca gcctggtcca gtccttcagt
     1141 ccttgatgtg tgaagcctgt taactgatcc cttcctgcag cagatgtgaa cactgtctga
     1201 cataggatgg gggcagggac cctgggcagc atctgccaac catacgcaag gcctggggct
     1261 ccacccacat gcaacacagt agtactgtaa aaacaagaag aatagaaaat cagctgaagc
     1321 ttttggaccg gaagacagtg gagacaaaat gaacaggact ccaaaggact tgtccaggat
     1381 tccacagtga ctcagaagca agcccagtga gtcaatgtcc tgaccaatct gtggcccact
     1441 gtgtgccagt tcacgacatt cggtctccag tgtggaggaa agtgacccat cccagtaaat
     1501 gcagcaccca ggagctggac atagaatctg agtacaaagc catccttggc tataaggctt
     1561 tcgtggcaca acccaggcct gtctaaacct cggaaggctt gtttgctact ttcaaacaag
     1621 aacaccaaag tctggttgca acaggaactt cacagtcgaa aaagcttaaa atgtagcctg
     1681 ggcctgggct tgtccacctc aatacagcaa acttttgaca gcccctcact gtggaatgac
     1741 accacagaca tttcacacct aatataaagc tggtgggagc aacaccactg taccctcaga
     1801 gactggttct ccctcaaaac tgtcactgct aaacaggtaa gagtgttcgc agcagggttg
     1861 ggggaggggt caagcaaatg tcattccaca gcctggaaat cctaatcttc ctttaataag
     1921 agttaacctc ctcctaaggt tttcctcatt gtatactaaa agcaagtgtt cgttacctcg
     1981 gtgaaatctg ccggaactag catgtatttg ccactggaac aaacaatggg tttttcttaa
     2041 ttaataaaac attaacatga aaatgtcaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
