LOCUS       XM_039094888             923 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus YjeF N-terminal domain containing 3
            (Yjefn3), transcript variant X1, mRNA.
ACCESSION   XM_039094888
VERSION     XM_039094888.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094888.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..923
                     /gene="Yjefn3"
                     /note="YjeF N-terminal domain containing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 19 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:498608"
                     /db_xref="RGD:1563236"
     CDS             47..892
                     /gene="Yjefn3"
                     /codon_start=1
                     /product="yjeF N-terminal domain-containing protein 3
                     isoform X1"
                     /protein_id="XP_038950816.1"
                     /db_xref="GeneID:498608"
                     /db_xref="RGD:1563236"
                     /translation="MSSSVHNDTGPVQLPEERRFLSTSEAAALERELLDEYRFGQQQL
                     VELCGHASAVAVTKVFPLPSLSRKQRTVLVVCGPEQNGAVGLACARHLRVFVSNRAVM
                     WGTETGLGSCCLLPPSPNPCSPQEYQPSIFYPARSADALHRDLTTQCEKMDIPFLSFL
                     PAEVRLIDDAYGLVVDAVLGPGVRLAEAGGPCARALATLKRLSIPLVSLDVPSGWDAE
                     AGGDAKDTVQPDVLVSFAAPKSCAGRFSGRHHFVAGRFVPDDVRRKFGLHLPKYTGTD
                     CVASL"
ORIGIN      
        1 aggccaccca taaaagacag agcagaggca gctttcctgt gcgaccatga gcagcagtgt
       61 gcacaacgac acgggtcctg tccagttgcc ggaggagagg cgctttctca gcacctcgga
      121 ggcggccgcc ctggagcggg agctactgga cgagtaccgc ttcgggcagc agcagctggt
      181 ggaactatgt gggcacgcca gtgcggtggc tgtgaccaag gtgttcccct tgccctcgct
      241 gtcgcggaag cagagaacgg tgcttgtcgt gtgcggcccg gagcagaatg gcgccgtggg
      301 gctggcgtgt gcccggcacc tacgggtgtt cgtgagtaac agggccgtga tgtgggggac
      361 agaaacgggg ctggggtcct gctgcctcct gcctccatca ccgaacccct gttcccccca
      421 ggaataccag cccagcatct tctaccccgc gcgttcagcc gacgcgttgc accgtgatct
      481 gaccacgcag tgcgagaaga tggacatccc cttcctgtcc ttcctgcccg ccgaggtgcg
      541 gctcatcgac gacgcgtacg ggctggtggt ggacgctgtg cttgggccgg gagtgcgact
      601 ggcggaggca ggcgggccct gcgcgcgcgc tctggccacg ctgaagcggc tctccatccc
      661 gcttgtgagc ctggacgtcc cctcaggctg ggatgccgag gctggcggcg acgcgaagga
      721 cacggtgcag cccgatgtgc tagtgtcctt tgcggcgccc aagagctgcg ctggccgctt
      781 ctccggacgt caccactttg tagccggcag gttcgtgcct gacgacgtgc gccgaaagtt
      841 tggcctgcac ctgccaaaat atactggcac cgactgcgtg gcctcactgt gacccgcacc
      901 aataaacatc tccaacacct ctc
//
