LOCUS       NM_001025747            2412 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Rattus norvegicus Yip1 domain family, member 6 (Yipf6), mRNA.
ACCESSION   NM_001025747 XM_343795
VERSION     NM_001025747.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Soonthornsit,J., Sakai,N., Sasaki,Y., Watanabe,R., Osako,S. and
            Nakamura,N.
  TITLE     YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi
            network-localized Yip domain family proteins, which play a role in
            the Golgi reassembly and glycan synthesis
  JOURNAL   Exp Cell Res 353 (2), 100-108 (2017)
   PUBMED   28286305
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Brandl,K., Tomisato,W., Li,X., Neppl,C., Pirie,E., Falk,W., Xia,Y.,
            Moresco,E.M., Baccala,R., Theofilopoulos,A.N., Schnabl,B. and
            Beutler,B.
  TITLE     Yip1 domain family, member 6 (Yipf6) mutation induces spontaneous
            intestinal inflammation in mice
  JOURNAL   Proc Natl Acad Sci U S A 109 (31), 12650-12655 (2012)
   PUBMED   22802641
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097987.1.
            
            On Jul 22, 2005 this sequence version replaced XM_343795.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097987.1, FQ103556.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..2412
                     /gene="Yipf6"
                     /note="Yip1 domain family, member 6"
                     /db_xref="GeneID:363476"
                     /db_xref="RGD:1566154"
     exon            1..62
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
     CDS             6..716
                     /gene="Yipf6"
                     /note="YIP1 family member 6"
                     /codon_start=1
                     /product="protein YIPF6"
                     /protein_id="NP_001020918.1"
                     /db_xref="GeneID:363476"
                     /db_xref="RGD:1566154"
                     /translation="MAEAEDSPGEQEATSSKPLFAGLSDVSISQDIPIEGEITIPSGT
                     RAQECDSSTLNESIRRTIMRDLKAVGRKFMHVLYPRKSNTLLRDWDLWGPLILCVSLA
                     LMLQKSSVEGKRDGGSPEFAEVFVIIWFGAVTITLNSKLLGGNISFFQSLCVLGYCVL
                     PLNIAMLICRLLLLAGQGPINFMIRLFVVLVMFAWSVIASTAFLADCQPPNRKALAVY
                     PVFLFYFVVSWMILTFTP"
     exon            63..191
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
     exon            192..270
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
     exon            271..313
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
     exon            314..442
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
     exon            443..600
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
     exon            601..2385
                     /gene="Yipf6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaagatggc ggaagcggag gactctcctg gagagcagga ggcaacgtca tctaagcccc
       61 tgtttgcagg gttatctgat gtgtcaattt cacaggacat tcccatagaa ggagagatta
      121 ccatcccctc aggaactcgt gctcaagaat gtgacagctc cacactaaat gaatccattc
      181 gtcggaccat catgcgagat ctaaaagctg tgggaaggaa gtttatgcac gttttatatc
      241 caaggaaaag taataccctg ttaagagatt gggacttgtg gggcccgttg attctttgtg
      301 tgtcacttgc attgatgcta cagaaaagtt ctgtagaagg gaagagggat ggcggaagcc
      361 cagagtttgc agaagtgttc gttatcatct ggtttggagc agttaccatc acactaaatt
      421 ccaaacttct tggtggaaac atttcttttt ttcagagtct ctgtgtatta ggatactgtg
      481 tacttccttt gaacattgca atgctgatct gccgcctcct gcttttggca gggcagggac
      541 caataaactt catgattcga ctttttgtcg tgttggtgat gttcgcttgg tctgtgatag
      601 catctacagc attccttgct gactgccagc ctccaaaccg aaaagccctg gcagtgtatc
      661 ccgtcttttt attctacttt gttgtcagtt ggatgatact cacattcact ccataaatcc
      721 ggatacacac attcaatacc aatgaactgc aagcccacct gagaaagata atggttacca
      781 agacaacttc ccctactctc gttcaattgt tggggtatta aaggggagcc acataccact
      841 gttgtcattt atatagaaac tgatattcgc aaggctgtcc ttttcctctt aatattacta
      901 ttttcaaata cttgtacata ccatgcatag taatgcctcc ttaaggcatg atgaagctat
      961 ttgtgtgaca accagtgact tgagcaagcg gatccactct acaaattaca aaagagttgg
     1021 tgaccatctt cagcttagag aatatttgtt caggtgcagc tcttaaacac attgccttat
     1081 gactattaga atatgcctct tttcataaat aacattctgt atccatttat tttcttctca
     1141 cccccaaact ggagaaggta acaacaagag gttaggaaca aggtttgtag atgtgggaag
     1201 aaaaaccatg ttaaccaatt ttcagatttt gatcagaggt actgctatac ttggtttttc
     1261 atttgttttt aagcaaataa catctaaaga atcaactttt aaagtatttt cgtatagtta
     1321 cctttctgtc atgtgtaaca gtacctcagc taacattcta gtttttaatc tttcatacaa
     1381 tgacagcagt caaacatgca acttctcttt gactggcgtt cttgatggtt taatgtttga
     1441 gcttttctaa gtagtagaag acctcagaaa tctaggttta tggtttgtaa tgcatattgt
     1501 catgtggaca ccttccttta aggcatagct tatatattgg atatctaaaa gagcctattt
     1561 tgtatgaccc agcctcacac tagaaaggaa agctacatca gaagcatgca tttaaccaag
     1621 tggacataga gatctagtgt tctgaaggcc ggataatgga aggatgctta cacacatgat
     1681 gaagggttag ttatgtttac agccgctgcc tttccatagt gggctcagca cagtttgttt
     1741 gttttcatta tatattatgg aggggttttt tttggataga aggctaagga atagcaattt
     1801 gttttatgtg ttttagattt tttgtaaagg taattagctt ccctttagat atgtacattt
     1861 tgcacatgtg catctaccta tactctcaga tatttatgcg caagagtgaa ggcttttcag
     1921 ggaacaaaac atctaaggca ggctgatttt cagctaaaga ggactcctgt aaggtagtaa
     1981 gaactgatac cttctatatg gttcacactg aagaatgcta attgatgact aggagtcaga
     2041 agacattcgt tgtaaatatg cagtaacctg taaagatagc aatttcttat tccatgtgtt
     2101 ttatcctaga atttaaatat ttattgattt ttgtatttaa agactacctt catataaata
     2161 tatgattcta aaaccataat ttttctcctt ctcagagtaa ccaagtgagc gacactaggc
     2221 caaatgggtt catgggatga gttacaaagc attactgagt ttatcctctg tcctgacgtt
     2281 gtctaattgt ttaggagtat atatttgagt tcattgtaat ttatctttta aattacaaat
     2341 tgtgaagata aatctgtgct tcaatcttaa aaactttaaa actaaaaaaa aaaaaaaaaa
     2401 aaaaaaaaaa aa
//
