LOCUS       NM_001009712            1847 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus Yip1 domain family, member 4 (Yipf4), mRNA.
ACCESSION   NM_001009712 XM_343017
VERSION     NM_001009712.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1847)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088468.1.
            
            On Jan 13, 2005 this sequence version replaced XM_343017.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088468.1, DN936830.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q13"
     gene            1..1847
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /note="Yip1 domain family, member 4"
                     /db_xref="GeneID:362699"
                     /db_xref="RGD:1310157"
     exon            1..278
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /inference="alignment:Splign:2.1.0"
     CDS             200..940
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /note="YIP1 family member 4"
                     /codon_start=1
                     /product="protein YIPF4"
                     /protein_id="NP_001009712.1"
                     /db_xref="GeneID:362699"
                     /db_xref="RGD:1310157"
                     /translation="MQPPGPPPAYAPANGDFTFVSSADAEDLSGSIAAPDVKLNLGVS
                     GDFIKESTATTFLRQRGYGWLLEVEDEDPEDNKPLLEELDIDLKDIYYKIRCVLMPMP
                     SLGFNRQVVRDNPDFWGPLAVVLFFSMISLYGQFRVVSWIITIWIFGSLTIFLLARVL
                     GGEVAYGQVLGVIGYSLLPLIVIAPILLVVGSFEMVSTLIKLFGVFWAAYSAASLLVG
                     EEFKTKKPLLIYPIFLLYIYFLSLYTGV"
     exon            279..438
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /inference="alignment:Splign:2.1.0"
     exon            439..610
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /inference="alignment:Splign:2.1.0"
     exon            611..688
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /inference="alignment:Splign:2.1.0"
     exon            689..802
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /inference="alignment:Splign:2.1.0"
     exon            803..1819
                     /gene="Yipf4"
                     /gene_synonym="RGD1310157"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgtcgtggt gcttgggtgc tcgccaccgg ctgggctctg gtgcgacctc gttaggagca
       61 gcagggtgga ctggctcgcg cgtctccacc ctcgccccag ccagcgcctc ctggctcgca
      121 ggccgcccct tagcaggtcg tccccgaggc ccgggcccag ccgctcccca gcaccttcgc
      181 gggctccgag gccagcggaa tgcagcctcc gggcccgccc ccggcctatg cgcctgccaa
      241 cggggacttc acctttgtct cttcggcgga cgcagaagat ctcagtggtt ctatagcagc
      301 tccagatgtc aaattaaacc tcggtgtaag tggagatttc atcaaagaat ctacagcaac
      361 gacatttctg agacagagag gctacggctg gcttttggaa gtcgaagatg aggatcctga
      421 agataataag ccacttttgg aagaattgga cattgaccta aaggatattt actacaaaat
      481 ccgctgtgtt ttgatgccaa tgccatcgct tggttttaat agacaagtgg tgagagacaa
      541 tcctgacttt tggggtccac tggctgttgt tctgttcttc tccatgatat cattatatgg
      601 acagtttagg gtggtctcat ggattataac catttggata tttggttcac tgacaatttt
      661 cttactggct agggttcttg gtggagaagt tgcatatggc caagttcttg gagttatagg
      721 atattcatta cttcctctca ttgtaatagc ccctatactt ttggtggttg gatcttttga
      781 aatggtgtct acacttataa aactatttgg cgtgttttgg gctgcctaca gtgctgcttc
      841 attacttgta ggtgaagaat tcaagaccaa aaagcctctg ctcatttatc cgatcttttt
      901 actgtacatt tattttttgt ccttatatac tggggtgtga tccaagttgt acatgaatca
      961 aaaagatggt gttacatttg tattaagctg ggaattcttg ctgaagggat tggaaaaaaa
     1021 ttactagtaa aattttatac attccagata gagaggcagg cttaaagtct ttttaaacaa
     1081 tattttttgt atttaagtaa ttgcagttat ctgggatttt ttttggtcag aattctgaat
     1141 tctgtttggt tcttcatatt ccgcgaataa ataaaaagcg ttgtgttttc agattgtgtc
     1201 aatattcacc tgaacacttg tgccaaaagc acctgcatgg gtaactgtgt ttcacttgaa
     1261 gataaatctg acaacatcct gaaaatctaa aagtgcaatt tttttcttta aaggattttc
     1321 tctggcacca cagatatcct ctagatacct atttatattt atacatatat atttatgaag
     1381 taattcttat tcacaaacta tatttctgga tagcctaaaa tttaagatac taaatctgat
     1441 gcttaaattt tctttaattt ggccattgtt ttttgtttaa aacttaaaat ttgctttgta
     1501 aattgtgtgt aattttttaa ctaatagttg ctggtgtaga ttcggtttgt gtgtatgttc
     1561 tcttaaaaac cagttttgaa cgtctagaca tttgatttta aagttttctg tttctctttt
     1621 tgaccaaagg agcaagagat ataatgggta tggcattcat taaaatcatt aatatatagg
     1681 aaaaataata tttatagcat cagtaaatat ttttaagtgg tacctttaaa tcacaaaagt
     1741 tacaggaaag agacttttga agtcatatgg tcttgaacaa tgttatatga agtagaaaat
     1801 aaaatgtttt ccagctgtga aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
