LOCUS       NM_001007801            2419 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Yip1 domain family, member 3 (Yipf3), mRNA.
ACCESSION   NM_001007801 XM_217351
VERSION     NM_001007801.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2419)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087102.1.
            
            On Dec 26, 2004 this sequence version replaced NM_001007801.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087102.1, AY387096.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760494
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..2419
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /note="Yip1 domain family, member 3"
                     /db_xref="GeneID:301245"
                     /db_xref="RGD:1308185"
     exon            1..186
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1149
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /note="YIP1 family member 3; liver regeneration-related
                     protein LRRGT00110; natural killer cell-specific antigen
                     KLIP1"
                     /codon_start=1
                     /product="protein YIPF3"
                     /protein_id="NP_001007802.1"
                     /db_xref="GeneID:301245"
                     /db_xref="RGD:1308185"
                     /translation="MATQAAPASGVRNGAGPEWGGFEENIQGGGSAVIDMENMDDTSG
                     SSFEDMGELHQRLREEEVDADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQA
                     SKAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKVAGELYGPLMLVFTL
                     VAILLHGMKTSDTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLAL
                     LGYGLFGHCIVLFITYNIHLHALFYLFWLLLGGLSTLRMVAVLVSRTVGPTQRLLLCG
                     TLAALHMLFLLYLHFAYHKVVEGILDTLEGPNIPPMQRVPRDIPAVLPAAKLPVAVVN
                     ATAKAIAVTLQSH"
     exon            187..384
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            385..491
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            492..537
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            538..630
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            631..762
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            763..876
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            877..1000
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
     exon            1001..2384
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; KLIP1; LRRGT00110; RGD1308185"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcctacctc gcctagtcgc tcctctgaac ctttccttcc ctcgggccca ggtctcacac
       61 tattcccacg agcgctagct tcagcgacgg gaagcctcga gggacatggc gactcaggcg
      121 gcgccggcca gcggcgtccg aaatggtgct ggcccggaat ggggaggctt cgaagaaaac
      181 atccagggtg ggggctcggc tgtgattgat atggagaaca tggacgatac ctcaggctcc
      241 agcttcgagg acatgggtga actacatcag cgcctgcgtg aggaagaggt agatgctgat
      301 gcagctgctg cagaagaaga ggacggggag tttctcggca tgaaaggctt taagggacaa
      361 ctgagccggc aggtagcaga tcagatgtgg caggcaggga agagacaagc ttcaaaggcc
      421 ttcagtttgt atgccaatat cgacatcctg agaccctact ttgatgtgga gcctgcccag
      481 gtccgaagca ggctcctgga gtccatgatc cctatcaaga tggtcaactt cccccagaaa
      541 gttgccggcg agctctacgg acctctcatg ctggtcttca cgctggttgc catccttctg
      601 catgggatga agacttctga cactatcatc cgggagggca ccctcatggg cacagccata
      661 ggcacctgct tcggatactg gctgggtgtc tcgtccttca tttacttcct tgcctacctg
      721 tgtaatgccc agatcaccat gctccagatg ttggcgctgc tgggctacgg cctcttcggg
      781 cactgtatag tcctgttcat cacctataac atccaccttc atgccctctt ctacctcttc
      841 tggctgctgt tgggtgggct ctccaccctg cgcatggtgg cagtgttggt gtcacggact
      901 gtgggcccta cccagcggct gctgctctgt ggcacactgg ctgccctgca catgctcttc
      961 ctgctctatc tgcatttcgc ctaccacaag gtggtcgagg ggatcctgga caccctggag
     1021 ggccccaaca tcccacccat gcagagggtc cccagagaca tcccagctgt gctccctgct
     1081 gccaagcttc ctgtcgctgt ggtcaatgcc accgccaagg ccatagcagt gaccctgcag
     1141 tcacactgac cctctctgca gtccttggcc tgccctgacc ccccagctct ggggcaaaag
     1201 attagcggac agtgctgagg atgtggctct gctggggtct gcaaccgcca agctgttgcc
     1261 taaacagctg ggcgccaggc gtggcttctg aggggctcaa ggccaggaac tcatgactag
     1321 gactgcaagt gtctgcagcc aagtgcagga tgtgtgtcag ctcttctggg cctcaccacc
     1381 tacccctttc tctcccttcc ctcctgtctt gctaaatata gacttggtaa ttaaaatact
     1441 gatgaggtct ggacctgcag ctcctgcccc agccagtctc ctgcccccca ttctgatgcc
     1501 cgtctctgtt ccggagccgt ggcagtgccg catgccttct gtgccctcac acccaggatg
     1561 agggcaggat aagcagacag agggcatgaa cagccgattg cagaagctgt ccccagagcg
     1621 gcacaggccc aagcataaga gcccatggtc ctcgtggcca tgcacccagg cctaagtccc
     1681 caggctgctg tccttttgag aagccaaggc aacagtgaca gatctccact tacaaggacc
     1741 ttccacacct gggccatcgt ggaagaatgt ccccatcgag cggacatttg aagccaagcg
     1801 tggtctacga ggctttagtt tcctaaaggt ttttccaagt gttaacagcc actccccttt
     1861 aacctccact gaagaaaatt caggccgagt gtggtgcatt cctcgtaatc ccagcactcg
     1921 ggtgcatagg gaggcggatc ttcaaggcca acctaatcaa cagagttcca agccagttag
     1981 ggctacacag tgagacccta tttcaacaaa atgtaagttc aggatgctgg agagcctgct
     2041 cagtggttaa acagacactg ctcttcgagg gggaatggac ttcagttccc agcacccatg
     2101 aatgtctcac aattgctttg aacttcagct ccaggtgctc caaggacctc tgagggacct
     2161 gtgtgctcac tgcgcaggca caggcacaaa cacagttaaa gtaagatcta ggggctggag
     2221 agatggctct gcttaagcgt gtactgccat tgcaaaagga ttcagtagct cagttctcag
     2281 catccatgtt tgggtcagat ctctcatacc tttagcgcca tcttctggct actagaggca
     2341 cctgcaaacc tgttaatatt ttaagtaaaa cgtagttaac agaaaaaaaa aaaaaaaaaa
     2401 aaaaaaaaaa aaaaaaaaa
//
