LOCUS       NM_198734               1183 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus Yip1 interacting factor homolog B, membrane
            trafficking protein (Yif1b), transcript variant 1, mRNA.
ACCESSION   NM_198734 XM_214879
VERSION     NM_198734.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Alterio,J., Masson,J., Diaz,J., Chachlaki,K., Salman,H., Areias,J.,
            Al Awabdh,S., Emerit,M.B. and Darmon,M.
  TITLE     Yif1B Is Involved in the Anterograde Traffic Pathway and the Golgi
            Architecture
  JOURNAL   Traffic 16 (9), 978-993 (2015)
   PUBMED   26077767
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Al Awabdh,S., Miserey-Lenkei,S., Bouceba,T., Masson,J., Kano,F.,
            Marinach-Patrice,C., Hamon,M., Emerit,M.B. and Darmon,M.
  TITLE     A new vesicular scaffolding complex mediates the G-protein-coupled
            5-HT1A receptor targeting to neuronal dendrites
  JOURNAL   J Neurosci 32 (41), 14227-14241 (2012)
   PUBMED   23055492
  REMARK    GeneRIF: A new protein trafficking pathway model is proposed in
            which Yif1B is the scaffold protein recruiting the 5-HT1A receptor
            complex.
REFERENCE   3  (bases 1 to 1183)
  AUTHORS   Carrel,D., Masson,J., Al Awabdh,S., Capra,C.B., Lenkei,Z.,
            Hamon,M., Emerit,M.B. and Darmon,M.
  TITLE     Targeting of the 5-HT1A serotonin receptor to neuronal dendrites is
            mediated by Yif1B
  JOURNAL   J Neurosci 28 (32), 8063-8073 (2008)
   PUBMED   18685031
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 8, 2021 this sequence version replaced NM_198734.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213940.1, SRR22582419.447515.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                JAXUCZ010000001.1  93667219-93667314
            97-329              JAXUCZ010000001.1  93673984-93674216
            330-434             JAXUCZ010000001.1  93674302-93674406
            435-513             JAXUCZ010000001.1  93674503-93674581
            514-571             JAXUCZ010000001.1  93674691-93674748
            572-727             JAXUCZ010000001.1  93675345-93675500
            728-821             JAXUCZ010000001.1  93675574-93675667
            822-1183            JAXUCZ010000001.1  93677020-93677381
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1183
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /note="Yip1 interacting factor homolog B, membrane
                     trafficking protein"
                     /db_xref="GeneID:292768"
                     /db_xref="RGD:735199"
     exon            1..96
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..977
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /note="isoform a is encoded by transcript variant 1;
                     protein YIF1B; YIP1-interacting factor homolog B"
                     /codon_start=1
                     /product="protein YIF1B isoform a"
                     /protein_id="NP_942029.2"
                     /db_xref="GeneID:292768"
                     /db_xref="RGD:735199"
                     /translation="MHATGLAAPAGTPRLRKWPSKRRVPVSQPGMADPHQFFDDTSSA
                     PSRGYGGQPSPGSLGYPTSSSEAAFLAAPMSNMAMAYGSSLAAQGKELVDKNIDRFIP
                     VSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDTPVAPRFDINAPDLYIPAMA
                     FITYILVAGLALGTQDRFSPDLLGLQASSALAWLTLEVVAILLSLYLVTVNTDLTTID
                     LVAFLGYKYVGMIGGVLTGLLFGKIGYYLVLAWCCVSIFVFMIRTLRLKILAQAAAEG
                     VPVRGARNQLRMYLTMAVAAAQPVLMYWLTFHLVR"
     exon            97..329
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            330..434
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            435..513
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            514..571
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            572..727
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            728..821
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            822..1183
                     /gene="Yif1b"
                     /gene_synonym="Yip1b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgaactgcg gctgtggcgt tcgcggtggt ggcttctaag catgcacgcg acaggtttgg
       61 cggcgccggc ggggacgccc cggctgcgta agtggccctc aaagcggagg gtcccagtgt
      121 cccaaccggg catggctgat ccccaccagt tttttgacga cacgagttca gccccgagcc
      181 ggggctatgg aggccagcca tcacctggta gcctgggtta ccccacctct tcatcggagg
      241 cagccttcct ggctgctcct atgtccaaca tggcgatggc ctacgggagc agcctggctg
      301 ctcagggcaa agagctggta gataagaata tcgaccgctt catccctgtc agcaagctca
      361 agtattactt cgccgtggac accgtgtacg tgggcaagaa gctcggactg ctcgtctttc
      421 cctaccttca ccaggactgg gaggtccagt accaacagga cacccccgtg gcgccccgct
      481 ttgacatcaa tgctccagac ctctacattc cagccatggc tttcataacc tacatcttgg
      541 tggccggcct tgcactgggg acccaggaca ggttctcccc agacctcctg ggactacagg
      601 cgagctcggc actggcttgg ctgactctgg aagtcgtagc cattctgctc agtctttacc
      661 tggtcactgt caacaccgac cttaccacca ttgacctggt ggccttcttg ggttacaaat
      721 atgtggggat gattggcggg gtcctcacag gcctgctctt tgggaagatt ggctactacc
      781 tggtgcttgc ctggtgctgt gtgtccatct ttgtgttcat gatccggaca ctgcggctca
      841 agatcctggc ccaggcagcg gccgaaggag tgccggtgcg cggggctcgg aaccagctgc
      901 gcatgtactt gactatggcg gtggcggctg cgcagccggt actcatgtac tggctcacct
      961 tccaccttgt acggtgaact gccggcctgg cctccagctc ccacactcat ctcgcttgac
     1021 cagggccccc gccctccagg cccgcgctct ccctcccagc caaggtgctc ttgtagccag
     1081 ctgcacaccc gcaacaataa acctgatggg ctcggcgcgg cctccgctcc tgcccggcag
     1141 agggcgccgg ggagcggaaa gggctgcaag tttaataagt taa
//
