LOCUS       NM_172017               1109 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Yip1 interacting factor homolog A, membrane
            trafficking protein (Yif1a), mRNA.
ACCESSION   NM_172017
VERSION     NM_172017.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Kuijpers,M., Yu,K.L., Teuling,E., Akhmanova,A., Jaarsma,D. and
            Hoogenraad,C.C.
  TITLE     The ALS8 protein VAPB interacts with the ER-Golgi recycling protein
            YIF1A and regulates membrane delivery into dendrites
  JOURNAL   EMBO J 32 (14), 2056-2072 (2013)
   PUBMED   23736259
  REMARK    GeneRIF: YIF1A interacts with VAPB via its transmembrane regions,
            recycles between the ER and Golgi and is mainly localized to the
            ER-Golgi intermediate compartments in hippocampal neurons.
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Breuza,L., Halbeisen,R., Jeno,P., Otte,S., Barlowe,C., Hong,W. and
            Hauri,H.P.
  TITLE     Proteomics of endoplasmic reticulum-Golgi intermediate compartment
            (ERGIC) membranes from brefeldin A-treated HepG2 cells identifies
            ERGIC-32, a new cycling protein that interacts with human Erv46
  JOURNAL   J Biol Chem 279 (45), 47242-47253 (2004)
   PUBMED   15308636
REFERENCE   3  (bases 1 to 1109)
  AUTHORS   Matern,H., Yang,X., Andrulis,E., Sternglanz,R., Trepte,H.H. and
            Gallwitz,D.
  TITLE     A novel Golgi membrane protein is part of a GTPase-binding protein
            complex involved in vesicle targeting
  JOURNAL   EMBO J 19 (17), 4485-4492 (2000)
   PUBMED   10970842
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BF521694.1, CV074812.1 and BG377998.1.
            
            On Oct 24, 2007 this sequence version replaced NM_172017.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ220202.1, FQ214813.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-248               BF521694.1         8-255
            249-782             CV074812.1         229-762
            783-1109            BG377998.1         1-327               c
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1109
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /note="Yip1 interacting factor homolog A, membrane
                     trafficking protein"
                     /db_xref="GeneID:171441"
                     /db_xref="RGD:628749"
     exon            1..185
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..1036
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /note="Yip1p-interacting factor; liver protein"
                     /codon_start=1
                     /product="protein YIF1A"
                     /protein_id="NP_742014.2"
                     /db_xref="GeneID:171441"
                     /db_xref="RGD:628749"
                     /translation="MAYHSGYGVHGSKHRTRAAPNPPPLFDDTSGGYSSQLGGYPAPG
                     ADVAFNVNNLLGDPVANMAMAYGSSIASQGKDIVHKELHRFVSINKLKYFFAVDTAYV
                     AKKLGLLVFPYTHQNWKVQYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQ
                     QRFSPEVLGLCASTALVWVLMEVLALLLGLYLATVRSELGTFHLLAYSGYKYVGMILS
                     VLTGLLFGSDGYYVALAWTSSALMYFTVRSLRTAASGPDSMGGPTPRQHLQLYLTLGA
                     AAFQPLIIYWLTFHLVR"
     exon            186..397
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            398..502
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            503..581
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            582..639
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            640..795
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            796..889
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1093
                     /gene="Yif1a"
                     /gene_synonym="Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgtggaca tggcggcggc gatcggccag ccccaggacg tgtcggacgg tcgggtaact
       61 ttgggcagga caaggcaaga gaagcggctg tttcagtagt gtttgtaccc agaactcagc
      121 gaagtctacc cttgggtaga gcgaacgtcc ggccatggct taccactcgg gatatggagt
      181 ccacggttcc aagcatagga cccgggcagc tccaaaccct cctccactct tcgatgatac
      241 aagtggtggt tattccagcc aactaggcgg atacccagcc ccaggagctg atgtagcctt
      301 caatgtcaac aacctgcttg gagacccagt ggccaatatg gctatggcct atggcagctc
      361 catagcatcc caagggaagg acatagtgca caaagagcta caccgttttg tgtctataaa
      421 caaactcaag tatttttttg ctgtggacac agcctatgta gccaagaagc tagggctatt
      481 ggtcttccct tacacacatc agaactggaa agtgcagtac agtcatgatg tgcctctgcc
      541 cccacggaaa gacctcaatg cgcctgacct ctatatcccc accatggcct tcatcacata
      601 cgtgctgctg gctgggatgg cactaggcat tcagcaaagg ttctccccag aggtgttggg
      661 cttgtgtgcg agcacagcac tggtgtgggt gttaatggag gtgttggctc tgcttctggg
      721 cctctacctg gccaccgtac gcagtgaact gggcaccttc cacctcttgg cctacagtgg
      781 ctacaagtat gtagggatga tcctcagtgt gctcacaggg ctgcttttcg gcagtgatgg
      841 ctactacgtg gccctggcct ggacatcgtc tgcactcatg tacttcactg tacgatcttt
      901 gcggactgca gcttcgggtc ctgacagcat ggggggccca acccctcggc agcatctcca
      961 gctgtacctg accctgggag ccgctgcctt ccaacccctt atcatatact ggctgacctt
     1021 ccacctggtc cggtgacccc tggtcctttg gtggcactga gttttccata cattgaagat
     1081 ttggtttcct taaaaaaaaa aaaaaaaaa
//
