LOCUS       XM_039088069            1538 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus YdjC chitooligosaccharide deacetylase
            homolog (Ydjc), transcript variant X2, mRNA.
ACCESSION   XM_039088069
VERSION     XM_039088069.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1538
                     /gene="Ydjc"
                     /note="YdjC chitooligosaccharide deacetylase homolog;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:287938"
                     /db_xref="RGD:1359227"
     CDS             304..1239
                     /gene="Ydjc"
                     /codon_start=1
                     /product="carbohydrate deacetylase isoform X1"
                     /protein_id="XP_038943997.1"
                     /db_xref="GeneID:287938"
                     /db_xref="RGD:1359227"
                     /translation="MAFPRVRLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGT
                     AAESAAELARRHSIPTGLHANLSEGRPVGPARHNASSLLSPEGFFLGKMGFREALAAG
                     DVALPQVREELEAQLSRFRELLGKSPTHVDGHQHVHVLPAGVCQVFAEALQEYGVRFT
                     RLPAERGVGSCAWLEAPARAFACTVERDARAAIGPFSRHGLRWTDAFVGLSTCGRHMS
                     AHRVLGSLARALEDIPAGHALTAELMAHPGYPSVPPAGGCGEGPDAFSCSWERLHELH
                     VLTAPTLRAWLAQNGVQLCAIDDLDSKRPGEGVPL"
ORIGIN      
        1 gagcagcttc tcagagaggc ccagtggttg aatgacactg gatggttcag caatcactat
       61 gatcagacac agcagtgttt atgccaagaa tttggctgaa gcgttctccg aggcctccaa
      121 ccattacaaa gcatcatcag cactggacaa gtggaagctc taggatcaga agttcaaggc
      181 tagcctcggc tgaatacata agactggtat acataagacc gtttcaaaaa agtatcaaga
      241 cagccacatt accatgcaaa ctctggctgt caccatggtg attatagcca ggatttggca
      301 gccatggctt ttccccgcgt gcggctggtt gtcaccgctg atgactttgg ttattgcccg
      361 cggcgggatg agggcatcgt ggaggccttc ctggcaggaa ctgtgaccag cgtgtcactg
      421 ctggtcaacg gcacagccgc agagagcgcg gccgagctgg cccgcaggca cagcattccc
      481 acgggtctcc acgccaacct gtctgagggc cgtccggtgg gcccggcccg ccacaacgcc
      541 tcgtcgctcc tcagtccgga aggcttcttt cttggcaaga tgggatttcg agaggcctta
      601 gcggctggag acgttgcttt gccccaggtg cgggaggagc tagaagctca actcagccgc
      661 ttccgggagt tgttgggcaa gtcccccacg cacgtggacg gtcaccagca cgtgcacgtg
      721 ctcccagcag gcgtgtgtca ggtgttcgcc gaggctttgc aggagtacgg ggtccgcttc
      781 acacggctgc cggcagaacg tggcgtgggc agctgcgcgt ggctcgaagc gccagcgcgc
      841 gccttcgcct gcactgtgga gcgcgatgcc cgggccgcca tcggtccctt ctctcgccac
      901 ggcctgcggt ggaccgatgc ctttgtgggc ctgagcactt gtggccggca tatgtctgct
      961 caccgagtct tgggatcact ggcgcgagcc ctagaagata tccctgctgg ccacgccctg
     1021 actgccgagc tgatggcaca ccccggatac cccagtgtgc ctccagcagg gggctgcggt
     1081 gagggcccag atgcattctc ttgttcttgg gagaggctgc atgagctgca cgttctcaca
     1141 gcacccactt tgagggcttg gctggcccaa aatggtgtgc agctctgcgc catagacgac
     1201 ctggattcca aaaggccagg ggaaggggtt cccttgtgag gcaactctgg aacctttctt
     1261 ggagccttcc cgtctctgac accgaaggcc agctacaaac tgcctaatca ctatgaaggc
     1321 cagggctaaa agcctgacta accctgttcc caggtccttt aggctgagta gaaggccgac
     1381 cttgggcagc cttgcctggc tgcaggcagg cccagtctga catcgggacg taaggccagc
     1441 tgagcattta tttggtgccc gttcatgtga catttgtaac cacttgttta agagcagtgg
     1501 gaagaggttg gtgtgttaat aaaataacgt ctttcaga
//
