LOCUS       NM_001013863            1260 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus YdjC chitooligosaccharide deacetylase homolog
            (Ydjc), mRNA.
ACCESSION   NM_001013863 XM_213567
VERSION     NM_001013863.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1260)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Mar 25, 2011 this sequence version replaced NM_001013863.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AW920596.1, SRR26643292.46590.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN12840129 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               JAXUCZ010000011.1  97347184-97347363   c
            181-340             JAXUCZ010000011.1  97346938-97347097   c
            341-440             JAXUCZ010000011.1  97346633-97346732   c
            441-618             JAXUCZ010000011.1  97346357-97346534   c
            619-1260            JAXUCZ010000011.1  97345528-97346169   c
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..1260
                     /gene="Ydjc"
                     /note="YdjC chitooligosaccharide deacetylase homolog"
                     /db_xref="GeneID:287938"
                     /db_xref="RGD:1359227"
     exon            1..180
                     /gene="Ydjc"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..949
                     /gene="Ydjc"
                     /note="UPF0249 protein ydjC homolog; YdjC homolog"
                     /codon_start=1
                     /product="carbohydrate deacetylase"
                     /protein_id="NP_001013885.2"
                     /db_xref="GeneID:287938"
                     /db_xref="RGD:1359227"
                     /translation="MAFPRVRLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGT
                     AAESAAELARRHSIPTGLHANLSEGRPVGPARHNASSLLSPEGFFLGKMGFREALAAG
                     DVALPQVREELEAQLSRFRELLGKSPTHVDGHQHVHVLPGVCQVFAEALQEYGVRFTR
                     LPAERGVGSCAWLEAPARAFACTVERDARAAIGPFSRHGLRWTDAFVGLSTCGRHMSA
                     HRVLGSLARALEDIPAGHALTAELMAHPGYPSVPPAGGCGEGPDAFSCSWERLHELHV
                     LTAPTLRAWLAQNGVQLCAIDDLDSKRPGEGVPL"
     exon            181..340
                     /gene="Ydjc"
                     /inference="alignment:Splign:2.1.0"
     exon            341..440
                     /gene="Ydjc"
                     /inference="alignment:Splign:2.1.0"
     exon            441..618
                     /gene="Ydjc"
                     /inference="alignment:Splign:2.1.0"
     exon            619..1260
                     /gene="Ydjc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaggatttg gcagccatgg cttttccccg cgtgcggctg gttgtcaccg ctgatgactt
       61 tggttattgc ccgcggcggg atgagggcat cgtggaggcc ttcctggcag gaactgtgac
      121 cagcgtgtca ctgctggtca acggcacagc cgcagagagc gcggccgagc tggcccgcag
      181 gcacagcatt cccacgggtc tccacgccaa cctgtctgag ggccgtccgg tgggcccggc
      241 ccgccacaac gcctcgtcgc tcctcagtcc ggaaggcttc tttcttggca agatgggatt
      301 tcgagaggcc ttagcggctg gagacgttgc tttgccccag gtgcgggagg agctagaagc
      361 tcaactcagc cgcttccggg agttgttggg caagtccccc acgcacgtgg acggtcacca
      421 gcacgtgcac gtgctcccag gcgtgtgtca ggtgttcgcc gaggctttgc aggagtacgg
      481 ggtccgcttc acacggctgc cggcagaacg tggcgtgggc agctgcgcgt ggctcgaagc
      541 gccagcgcgc gccttcgcct gcactgtgga gcgcgatgcc cgggccgcca tcggtccctt
      601 ctctcgccac ggcctgcggt ggaccgatgc ctttgtgggc ctgagcactt gtggccggca
      661 tatgtctgct caccgagtct tgggatcact ggcgcgagcc ctagaagata tccctgctgg
      721 ccacgccctg actgccgagc tgatggcaca ccccggatac cccagtgtgc ctccagcagg
      781 gggctgcggt gagggcccag atgcattctc ttgttcttgg gagaggctgc atgagctgca
      841 cgttctcaca gcacccactt tgagggcttg gctggcccaa aatggtgtgc agctctgcgc
      901 catagacgac ctggattcca aaaggccagg ggaaggggtt cccttgtgag gcaactctgg
      961 aacctttctt ggagccttcc cgtctctgac accgaaggcc agctacaaac tgcctaatca
     1021 ctatgaaggc cagggctaaa agcctgacta accctgttcc caggtccttt aggctgagta
     1081 gaaggccgac cttgggcagc cttgcctggc tgcaggcagg cccagtctga catcgggacg
     1141 taaggccagc tgagcattta tttggtgccc gttcatgtga catttgtaac cacttgttta
     1201 agagcagtgg gaagaggttg gtgtgttaat aaaataacgt ctttcagatt tggctggttt
//
