LOCUS       NM_001305212            1555 bp    mRNA    linear   ROD 07-JUL-2018
DEFINITION  Rattus norvegicus Y box binding protein 2 (Ybx2), mRNA.
ACCESSION   NM_001305212 XM_001079683 XM_220618
VERSION     NM_001305212.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Xu D, Xu S, Kyaw AMM, Lim YC, Chia SY, Chee Siang DT,
            Alvarez-Dominguez JR, Chen P, Leow MK and Sun L.
  TITLE     RNA Binding Protein Ybx2 Regulates RNA Stability During
            Cold-Induced Brown Fat Activation
  JOURNAL   Diabetes 66 (12), 2987-3000 (2017)
   PUBMED   28970281
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Yang J, Morales CR, Medvedev S, Schultz RM and Hecht NB.
  TITLE     In the absence of the mouse DNA/RNA-binding protein MSY2, messenger
            RNA instability leads to spermatogenic arrest
  JOURNAL   Biol. Reprod. 76 (1), 48-54 (2007)
   PUBMED   17035640
REFERENCE   3  (bases 1 to 1555)
  AUTHORS   Paredes A, Garcia-Rudaz C, Kerr B, Tapia V, Dissen GA, Costa ME,
            Cornea A and Ojeda SR.
  TITLE     Loss of synaptonemal complex protein-1, a synaptonemal complex
            protein, contributes to the initiation of follicular assembly in
            the developing rat ovary
  JOURNAL   Endocrinology 146 (12), 5267-5277 (2005)
   PUBMED   16150897
REFERENCE   4  (bases 1 to 1555)
  AUTHORS   Yang J, Medvedev S, Yu J, Tang LC, Agno JE, Matzuk MM, Schultz RM
            and Hecht NB.
  TITLE     Absence of the DNA-/RNA-binding protein MSY2 results in male and
            female infertility
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 102 (16), 5755-5760 (2005)
   PUBMED   15824319
REFERENCE   5  (bases 1 to 1555)
  AUTHORS   Yang J, Medvedev S, Reddi PP, Schultz RM and Hecht NB.
  TITLE     The DNA/RNA-binding protein MSY2 marks specific transcripts for
            cytoplasmic storage in mouse male germ cells
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 102 (5), 1513-1518 (2005)
   PUBMED   15665108
REFERENCE   6  (bases 1 to 1555)
  AUTHORS   Yu J, Hecht NB and Schultz RM.
  TITLE     Requirement for RNA-binding activity of MSY2 for cytoplasmic
            localization and retention in mouse oocytes
  JOURNAL   Dev. Biol. 255 (2), 249-262 (2003)
   PUBMED   12648488
REFERENCE   7  (bases 1 to 1555)
  AUTHORS   Yu J, Hecht NB and Schultz RM.
  TITLE     RNA-binding properties and translation repression in vitro by germ
            cell-specific MSY2 protein
  JOURNAL   Biol. Reprod. 67 (4), 1093-1098 (2002)
   PUBMED   12297523
REFERENCE   8  (bases 1 to 1555)
  AUTHORS   Yu J, Hecht NB and Schultz RM.
  TITLE     Expression of MSY2 in mouse oocytes and preimplantation embryos
  JOURNAL   Biol. Reprod. 65 (4), 1260-1270 (2001)
   PUBMED   11566752
REFERENCE   9  (bases 1 to 1555)
  AUTHORS   Davies HG, Giorgini F, Fajardo MA and Braun RE.
  TITLE     A sequence-specific RNA binding complex expressed in murine germ
            cells contains MSY2 and MSY4
  JOURNAL   Dev. Biol. 221 (1), 87-100 (2000)
   PUBMED   10772793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AABR07029863.1.
            
            [WARNING] On Jun 29, 2023 this sequence was replaced by
            NM_001305212.2.
            
            On or before Mar 4, 2015 this sequence version replaced
            XM_220618.8, XM_001079683.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2689604,
                              SAMN00632251 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-333               AABR07029863.1     43211-43543
            334-397             AABR07029863.1     44182-44245
            398-431             AABR07029863.1     45576-45609
            432-521             AABR07029863.1     46455-46544
            522-806             AABR07029863.1     47122-47406
            807-910             AABR07029863.1     47584-47687
            911-1088            AABR07029863.1     47834-48011
            1089-1173           AABR07029863.1     48303-48387
            1174-1555           AABR07029863.1     48480-48861
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="mixed"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1555
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /note="Y box binding protein 2"
                     /db_xref="GeneID:303250"
                     /db_xref="RGD:1305068"
     exon            1..333
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     CDS             60..1139
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /codon_start=1
                     /product="Y-box-binding protein 2"
                     /protein_id="NP_001292141.1"
                     /db_xref="GeneID:303250"
                     /db_xref="RGD:1305068"
                     /translation="MSEAEAAVVATAAPAATVPATAAGVVAVVVPVPAGEPQKAGGGA
                     GGGGGAASGPAAGTPSAPGPRTPGNQATAASGTPAPPARSQADKPVLAIQVLGTVKWF
                     NVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAAN
                     VTGPGGVPVKGSRYAPNRRRFRRFIPRPRPAAPPPMVAEAPSGGTEPGSEGERAEDSG
                     QRPRRRRPPPFFYRRRFVRGPRPPNQQQPIEGSDGVEPKETTPLEGDQQQGDERVPPP
                     RFRPRYRRPFRPRPPQQPTTEGGDGETKPSQGPTDGSRPEPQRPRNRPYFQRRRQQPP
                     GPRQPIAAETSAPINSGDPPTTILE"
     exon            334..397
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            398..431
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            432..521
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            522..806
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            807..910
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            911..1088
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            1089..1173
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
     exon            1174..1555
                     /gene="Ybx2"
                     /gene_synonym="RGD1305068"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
        1 tggtggtggc agcggcggag gaggcggtgg cggcgggggc cggtactgga cccggcggga
       61 tgagcgaggc ggaggcggca gtggtggcga cagcggcccc cgcggcgacg gtgcccgcga
      121 cggcggcagg ggtggtagcg gtggtggtac cggtgcccgc gggagagccg cagaaagcag
      181 gcggcggggc gggcggcggg ggcggagccg cctctggccc cgctgctggg accccctcag
      241 cgcccggccc tcgcacccct ggcaaccagg cgacggcggc ctcggggact cccgcgcccc
      301 cggcccggag tcaggcggac aagccggtgc tggcaatcca agtcctgggc actgtcaaat
      361 ggttcaacgt ccggaatggt tacggattca tcaacaggaa tgacaccaag gaggatgtct
      421 ttgttcacca gacagctatt aaaagaaaca accccaggaa gtttctgcga agtgttggag
      481 atggggagac tgtggagttt gatgtcgtgg aaggagagaa gggtgcagaa gctgctaatg
      541 taactgggcc tgggggggtg ccagtgaagg gcagccgcta tgcccccaat cgacgtaggt
      601 tccgtagatt cattcctcgg cctcgcccgg ctgccccacc acccatggtg gcagaggctc
      661 cctcaggtgg gacagaacct ggcagcgaag gggaacgggc agaggactcg gggcagcgac
      721 ctagacgacg gcgcccacct cccttcttct atcgaaggcg gtttgtgcga ggccctcggc
      781 cccccaacca gcaacagccc atagagggct ccgatggggt agaacccaag gagacaaccc
      841 cattggaggg tgaccaacag cagggagatg aacgggtacc cccacccaga ttccggccca
      901 ggtaccgaag gcctttccgc cccaggccac cccaacagcc taccacagaa ggtggggatg
      961 gagagaccaa gcccagccaa ggccccactg atggctcccg gcctgagccc cagcgtccac
     1021 gaaaccgtcc ctacttccag aggcgtcggc agcagccccc tggcccccgg cagcctatag
     1081 ctgcggagac ctcagcacct atcaacagtg gggacccccc caccaccata ctggagtgat
     1141 tccaactcag aggacaccca gagctaccat ctggtatctg ccagtttcca actgactcta
     1201 cccagcatcc ccctcccccc tttcccataa ttcatgacat caaaacatca gcttttccct
     1261 tgagactcag gagggccaaa gcaacagcct ttggcttttt tctctttttt tcccctctcc
     1321 cctagcatgg gttgaaggaa gggatccatc cttattgttc agaggcatca cctccctccc
     1381 ctaagtcagg ctgagaagga accagccagc tcatacctcc tcctgattgt ttttcttccc
     1441 cacccattta ttttttgttt cccttcgacc tccccccatc acctctgaag ccattttatg
     1501 aactgtcatg tgccacctga gcctccagta aaaacaaaag caggctttct tgttg
//
