LOCUS       NM_001033704            3291 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus xylulokinase (Xylb), mRNA.
ACCESSION   NM_001033704 XM_236691
VERSION     NM_001033704.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Bunker,R.D., Bulloch,E.M., Dickson,J.M., Loomes,K.M. and Baker,E.N.
  TITLE     Structure and function of human xylulokinase, an enzyme with
            important roles in carbohydrate metabolism
  JOURNAL   J Biol Chem 288 (3), 1643-1652 (2013)
   PUBMED   23179721
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001033704.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101852.1, SRR26360181.1588157.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JAXUCZ010000008.1  127973798-127973863
            67-149              JAXUCZ010000008.1  127975167-127975249
            150-219             JAXUCZ010000008.1  127977553-127977622
            220-300             JAXUCZ010000008.1  127981030-127981110
            301-387             JAXUCZ010000008.1  127984212-127984298
            388-516             JAXUCZ010000008.1  127984795-127984923
            517-582             JAXUCZ010000008.1  127986141-127986206
            583-655             JAXUCZ010000008.1  127988144-127988216
            656-774             JAXUCZ010000008.1  127990415-127990533
            775-856             JAXUCZ010000008.1  127993834-127993915
            857-897             JAXUCZ010000008.1  127996552-127996592
            898-1013            JAXUCZ010000008.1  127997161-127997276
            1014-1129           JAXUCZ010000008.1  127998043-127998158
            1130-1203           JAXUCZ010000008.1  127998772-127998845
            1204-1300           JAXUCZ010000008.1  127999291-127999387
            1301-1359           JAXUCZ010000008.1  128000427-128000485
            1360-1447           JAXUCZ010000008.1  128002427-128002514
            1448-1542           JAXUCZ010000008.1  128003739-128003833
            1543-3291           JAXUCZ010000008.1  128004820-128006568
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..3291
                     /gene="Xylb"
                     /note="xylulokinase"
                     /db_xref="GeneID:316067"
                     /db_xref="RGD:1307372"
     exon            1..66
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..1620
                     /gene="Xylb"
                     /EC_number="2.7.1.17"
                     /note="xylulokinase homolog (H. influenzae)"
                     /codon_start=1
                     /product="xylulose kinase"
                     /protein_id="NP_001028876.2"
                     /db_xref="GeneID:316067"
                     /db_xref="RGD:1307372"
                     /translation="MAERAGRRCCLGWDFSTQQVKVVAVDAELNVFYEDSVHFDRDLP
                     EFGTQGGVHVHKDRLTVTSPVLMWVQALDLILEKMKASGFDFSQVLALSGAGQQHGSV
                     YWKTGASLALSSLSPALLLHQQLQACFSVSDCPIWMDSSTTAQCHQLEAAVGGAQALS
                     CLTGSRAYERFTGNQISKIFQKNPEAYSNSERISLVSSFAASLFLGGYSPIDYSDGSG
                     MNLLQIQEKVWSQACLDACAPHLKEKLGSPVPSCSVVGAISSYYVQRYGFPPGCKVVA
                     FTGDNPASLAGMRLEEGDVAVSLGTSDTLFLWLQKPMPALEGHIFCNPVDARQYMALL
                     CFKNGSLMREKIRDESASCSWNKFSKALQSTEMGNNGNLGFYFDVMEITPEIIGCHRF
                     NADNMEVSAFPGDVEIRALVEGQFMAKRIHAEGLGYRIMPKTKILATGGASHNKDILQ
                     VLADVFGAPVYVIDTTSSACVGSAYRAFHGLAGGTGVAFSEVVKSAPQPSLAATPNPG
                     ASQVYAALLPRYAELEQRILSKARGPLE"
     exon            67..149
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            150..219
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            220..300
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            301..387
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            388..516
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            517..582
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            583..655
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            656..774
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            775..856
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            857..897
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1013
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1129
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1203
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1300
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1359
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..1447
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1448..1542
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..3291
                     /gene="Xylb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccaagacca tggcggagcg ggcgggccgc cgctgttgcc tgggctggga cttcagcacg
       61 cagcaggtca aagtcgttgc tgttgatgca gagctgaacg tcttctatga ggacagtgtg
      121 cattttgaca gagaccttcc ggaatttgga actcagggcg gtgtccatgt acacaaggac
      181 aggctgacgg tcacctctcc ggtcctgatg tgggtccagg ctctggacct gatcctggag
      241 aagatgaagg cttccggctt tgacttctct caagttctag ccttatctgg ggcaggccag
      301 caacacggaa gcgtttactg gaagactgga gccagcctgg cgttgtcaag cctgtcaccg
      361 gctctcctgt tgcatcagca gctacaggcc tgcttctccg tcagtgactg cccgatatgg
      421 atggactcca gtaccacagc ccagtgtcac cagctggagg ctgcggtggg tggggcccag
      481 gctctcagct gcctcacagg gtcccgggcc tatgagcgat ttacggggaa ccagatctca
      541 aagattttcc agaagaaccc tgaggcctac tcgaactctg agagaatttc cttggtcagt
      601 agttttgctg cttcgctgtt cctgggtggg tactcgccca tcgactacag tgatgggtct
      661 ggaatgaatt tgttgcagat ccaggaaaaa gtctggtccc aggcttgcct ggatgcctgt
      721 gccccccatt tgaaggagaa gctgggttca ccggtccctt cctgctctgt tgtgggagcc
      781 atttcttcct actacgttca gcgctatgga ttccctccag gatgcaaagt ggtggccttc
      841 actggggaca acccggcatc actggccggc atgaggctgg aggaaggaga tgttgcggtc
      901 agcctgggca ccagcgacac cctatttctc tggctccaaa agcccatgcc tgccttggaa
      961 gggcacatct tctgcaaccc agtggatgca cggcaatata tggcgcttct gtgctttaaa
     1021 aatggctccc tcatgagaga gaagattcga gacgagtctg cttcctgttc ctggaacaag
     1081 ttctctaagg ccctgcagtc cactgagatg gggaacaacg gaaacttggg tttttatttc
     1141 gatgtcatgg agatcacccc tgagattatc gggtgccata ggtttaatgc agataacatg
     1201 gaggtctcgg cattccctgg agatgtggag atccgagcgc tggttgaagg ccagttcatg
     1261 gccaagagga ttcatgcaga aggcctaggc taccgaatca tgcctaagac aaagattctg
     1321 gccacgggag gagcctctca caataaagac atcttgcagg tgcttgcaga tgtttttggg
     1381 gcccctgtgt atgtcataga caccaccagt tcagcctgtg ttggctccgc ataccgagcc
     1441 tttcacggcc ttgcaggagg gacaggtgta gccttttcag aggtggtaaa atcagcacca
     1501 cagcccagcc tggctgccac ccccaaccca ggagcttccc aggtttatgc agcccttctc
     1561 cctcgatatg ctgaactgga acagagaatc ttgtccaaag ctcgggggcc tctggaatga
     1621 attcttcggg cccaggcact ctgctgcctc cctggtggca ctcgctctcg cctccttggt
     1681 ctgaacagtt cggctgtgct gaacctgtgg agtactcctg tcctgtcctg aaccatcctg
     1741 aagccatgac tccttggaga catgtggcct gcatgtcctg ggatggaaaa gcaatttctc
     1801 cttttctgtt tttcattcag gaaaacatgg tagggtatgg ccaccaaaga caatcctctt
     1861 cccctttcaa agggacaaac agcagcacag ggagagactg tcttttccct gactctgacc
     1921 actcctcctt cctcaccttc agccacctcc cctatactgg aaccgcaatc ctccatcctt
     1981 cccagcaaac cagactaagc cacttctctc ctacctgtga ctaaccctcc tgtttctgtg
     2041 ggtgtcttcc cagggctctc gtctgtctgt ctgtctgtct gtctgtctgt ctccatcttc
     2101 cctccctata cgcacctggt ataacttccc actcaagacg accttcatgg acctggtgaa
     2161 tatccttcct tcccctcccc cagccctgta cagagactgc ctgactgggg tttcctgggt
     2221 gccctggctg ggtatctatc tcccaggcta aacacttccg ggttcttccg tatttcattg
     2281 tagttcacat gatgacagaa ttatgtgttt tgagaaattt ctaaattctg gctttctttt
     2341 tttgaggggg cgggtagggg ttatctcctg ctgccctcaa actttctttg cagcgaaaag
     2401 tgaccttaaa cttaagcttt cttcctgcca ccatctccca agtatgtgcc accacacctg
     2461 gtttatgcca taccagggat tgaacccaca gcctcacgta ttctaggcaa acactctacc
     2521 tgctgagccg cacgcctggc ctgggtttcc tttttaactg gcatactttc acctctcact
     2581 tccacgtatc ctactatgct tgagcagatg ccaagtcttc cctctctacc cctgcttcac
     2641 acttttcttg gtggtgatct caccccctca tcaccccctg gaggtttcct ctgctacaag
     2701 gccatgctga actcaggact cgaccactgg atctgacaca gtggcgagat gttgcagaca
     2761 ggagtgagac cagggtcaga gcagtgactg ctgggaaatc aaaagacaga gatggaaaga
     2821 gacttgtgtc tagacatgag gtcgcttgga aggctcggtg tgggggtggg ggggaagaag
     2881 caaccataac catcgtgccc acaacaaacc cacagtgcag aaggaaacgc ctctgggaca
     2941 ttgcttgtta cagagatttt atactgcaaa ggcatctggg accgcacaac agttaaccag
     3001 gacgacattc caacagatct tccctacagt aaatcagaca attttggatg aaaaaggcct
     3061 ccgtaggtga caagtgaaaa aacaaatcca aatggaaact cggcaagtct atgtgagaag
     3121 acactgaacg gaaggataga ccgtgacaga tctggacaat ttacggcaca tcaaagagga
     3181 gggaggcgcc gagggaagtt cagggaggca ccagaaaaga agggaggaga ataaagacaa
     3241 gatccctgtt gatacttaga acttcccaaa ataaacaaaa ttttgaaaac a
//
