LOCUS       XM_344027               2880 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus xyloside xylosyltransferase 1
            (Xxylt1), transcript variant X1, mRNA.
ACCESSION   XM_344027
VERSION     XM_344027.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_344027.10.
            
            On Jan 21, 2021 this sequence version replaced XM_344027.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2880
                     /gene="Xxylt1"
                     /note="xyloside xylosyltransferase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 35
                     ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 235
                     samples with support for all annotated introns"
                     /db_xref="GeneID:363799"
                     /db_xref="RGD:1308154"
     CDS             103..1281
                     /gene="Xxylt1"
                     /codon_start=1
                     /product="xyloside xylosyltransferase 1"
                     /protein_id="XP_344028.5"
                     /db_xref="GeneID:363799"
                     /db_xref="RGD:1308154"
                     /translation="MDLLRGGAACARAMARLGAVRSHYCALLLAAALAVCAFYYLGSG
                     RETFSSATKRLKEARAGAAAPTPPVPELARGSAAPASGAKAKNLEGGLAVPVDYHLLM
                     MFTKAEHNAALQAKARVALRSLLRLAKFEPHEVLNLHFVSEEASREVAKALLRELLPP
                     AAGFKCKVIFHDVAVLTDKLFPVVEAMQKYFSAGSGTYYSDSIFFLSVAMHQIMPKEI
                     LRIIQLDLDLKYKTNIRELFEEFDNFLPGAVIGIAREMQPVYRHTFWQFRHENPKTRV
                     GDPPPEGLPGFNSGVMLLNLEAMRQSPLYGHLLEPAWVQQLADKYHFRGHLGDQDFFT
                     MIGMEHPELFHVLDCTWNRQLCTWWRDHGYSDVFPAYFHCEGHVKIYHGNCNTPIPED
                     "
ORIGIN      
        1 agcgcggtcc cgcccccgct atggccgccg cccgctgccg ggctccgggc cctggagtgc
       61 tgctttgagt gggcccggct gctgggccgc cggctccggc gcatggacct cctccgaggc
      121 ggggccgcgt gcgctcgggc catggcgcgc ctgggcgcgg tgcgctcgca ctactgcgca
      181 ctgctgctgg ccgcggcgct ggcagtgtgc gccttctact acctgggctc gggccgggag
      241 accttctcca gcgccaccaa gaggctgaag gaggcccgcg ccggggccgc cgcgcccacg
      301 ccgcccgtgc ccgagctggc ccggggctcc gcggcgccgg cctccggtgc caaggccaag
      361 aacctggagg gcggcttggc ggtcccggtg gactaccacc tgctcatgat gttcaccaag
      421 gcggagcaca acgcggcgct gcaggccaag gctcgagtgg cgctgcgctc cctgctgcgc
      481 ctcgccaagt tcgagccgca cgaggtgctt aacctccact tcgtgagcga agaggccagc
      541 cgcgaggtgg ccaaggccct gctgcgggag ctcctgccgc ccgccgccgg tttcaagtgc
      601 aaggtcatct tccatgatgt tgctgtgctg acagacaagc tcttccctgt cgtggaggcc
      661 atgcagaagt acttcagtgc tggctcaggg acctactaca gcgactccat cttcttcctc
      721 tcggttgcta tgcatcagat catgcccaaa gagatcctga ggatcattca gctggacctt
      781 gatctgaagt ataagaccaa catccgagag ctgtttgagg agtttgataa cttcctgccc
      841 ggtgctgtta tcggcatagc cagagagatg cagcctgtgt acaggcacac attctggcag
      901 ttccgccacg agaaccccaa gaccagagtt ggggaccctc ctcctgaagg actccctggc
      961 ttcaacagtg gagtgatgct gctgaacctg gaggccatgc gccagtctcc gctctacggc
     1021 catctgctgg aacctgcctg ggtgcagcag cttgctgaca agtaccactt ccggggccac
     1081 ctgggggacc aggacttctt caccatgatc ggcatggagc acccggaact cttccacgtg
     1141 ctggactgca cctggaaccg gcagctgtgc acctggtgga gggaccatgg ctacagcgac
     1201 gtcttcccgg catactttca ctgtgagggc cacgtcaaga tctaccatgg gaactgcaac
     1261 actcctatcc cagaggacta ggcaccagct cgcccgctat gccagtgggg ctcccgggcc
     1321 tgggaagaga gagagactcg gctcggatgc cctccagggg ccaggtgctg cagatgcccc
     1381 agctggctgg ttcctgtcca gccggtcgcc atccagagag gctcagctga gccctcctgg
     1441 cactcagact gtttcgctcc gggcatcctg ggacacacac gggcggttga agatccggaa
     1501 ggaagggaaa ttgccccttg tctacataga atcagaatcc ttgtaaaggt ctggctttgc
     1561 tagactgaat aagcatcccg agcagcaaac tctaatgctt tgtgagagaa cagactgctg
     1621 ggctcccagt gagcactgaa tgccgagtga gagttttaac aagcagccca gggcagaagc
     1681 ctccaaagga atgccatggt ctcacatcct ttcccaggag gctttgcacc tcctccaggc
     1741 attcatgttg cctggtgcag gctacactgg cagccccttt tggataaggc ctgagcatgt
     1801 aagaatctgc ttactgtccc actcgcagct ctacccctac tgtatcccag aaccgtctac
     1861 ctgccccagg gactgaccac taaggaatca aatctatcat caaaggacag agattgccca
     1921 tgccacggcg tgcactagat tcactccaag gagcagccaa ccaggtctca ggtacaactg
     1981 ggtgagcttg ggaagaggtg gcctcctagt ctcatcatag tccctggaga ggaaagaaaa
     2041 caaactccta atttcccttc ccagaagtga gtaccatttc tctatgtacg cttgagatgg
     2101 actctgtaag tcaactgccc acaggaaatc cccacaggcc atgtctgcac cctcaggcaa
     2161 gaaatgggag gttcttacta tatagtctgt aattaccatg agagacacta gtctttgaga
     2221 acacttgagt catggcattt gctctctggc tgcagtgttc agggcacagg gctctgaaag
     2281 aagaatagag tcagtatcaa ccagaagacc taaaaggacc aaccggaagg cctgcctgtg
     2341 gctgccagtt gggtggtact gtcctgtttg gttccagatg cagaactatc tcattctagc
     2401 tcttggcagg ctcatctgct gccgggaaga agcccggatg tcgctggctc cttagcccag
     2461 acctcccagt tccattcatg cctggtgagg tggcacactc cttcaccagc cctctgctgg
     2521 gcccaggtca tctgttctcc cagctacttg gcgtcctatt tatagcgtct gttcttagat
     2581 gcctgctgtg caccaggcgt tggcttaagg atttctgtgt gccctggata ataatcatga
     2641 aaacctcaac aagttcatcc ccagctctaa aactgagcta tgaaaacaga catggacggg
     2701 ccctctgttg tgtcgtttac tgaagctttt tatttacaga aatgttggaa actgttgcta
     2761 gggaagcaga taaataatgc agtcatatgg tgggatatat tagaaatcat ttgaaggaat
     2821 atttcatgta ccaggaaata cttatgctag tgagtaaaga atacacaata taagattgta
//
