LOCUS       XM_039105476            3260 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 5'-3' exoribonuclease 2 (Xrn2),
            transcript variant X2, mRNA.
ACCESSION   XM_039105476
VERSION     XM_039105476.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3260
                     /gene="Xrn2"
                     /note="5'-3' exoribonuclease 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 48
                     ESTs, 4 long SRA reads, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 14 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:362229"
                     /db_xref="RGD:1310218"
     CDS             109..2802
                     /gene="Xrn2"
                     /codon_start=1
                     /product="5'-3' exoribonuclease 2 isoform X2"
                     /protein_id="XP_038961404.1"
                     /db_xref="GeneID:362229"
                     /db_xref="RGD:1310218"
                     /translation="MNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLL
                     YMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD
                     SNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRR
                     QRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNKPKPCALCNQFGHE
                     VKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPFPFDVER
                     SIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQR
                     VQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPYALGSR
                     NSPGCQVASNPRQAAYEMRMQSNSSPSISPNTSFASDGSPSPLGGLKRKAEDSDSEPE
                     PEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKW
                     YYPFHYAPFASDFEGIADMPSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSD
                     PDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNS
                     LGSDVLFVGKVHPLHDFILELYQTGSTEPVDVPPELCHGIQGKFSLDEEAILPDQTVC
                     SPVPMLRDLTQNTAISINFKDPQFAEDYVFKAIMLPGARKPAAVLKPGDWEKSSNGRQ
                     WKPQLGFNRDRRPVHLDQAAFRTLGHVIPRGSGTGVYSNTAPPPANYQGNVYRPLLRG
                     QAQIPKLMSNMRPQDNWRGPPPLFQQQRFDRSVGAEPLLPWNRMLQTQNAAFQPNQYQ
                     MLAGPGGYPPRRDDHRGGRQGYPREGRKYPLPPPSGRYSWN"
ORIGIN      
        1 agttgtgcta agcacctata tccaaaagaa tgcaatggtg tgaagattcc agttgatgcc
       61 agtaaaccta atccaaatga tgtggagttt gataatctgt atttggatat gaatggaatc
      121 atccatccct gtactcatcc tgaagacaaa ccagcaccaa aaaatgaaga tgaaatgatg
      181 gttgcaattt ttgagtacat tgacagactt ttcaatattg taagaccaag aagacttctc
      241 tatatggcaa tagatggagt ggcaccacgt gccaaaatga accagcagcg ttcaaggagg
      301 ttcagagcat ctaaggaagg aatggaagcc gcagttgaga agcagcgagt cagagaggaa
      361 atacttgcaa aaggtggctt tcttcctcca gaagaaataa aagaaagatt tgacagcaac
      421 tgtattacac caggaactga gttcatggac aatcttgcta aatgccttcg ctattacata
      481 gctgatcgtt taaataatga ccccgggtgg aaaaatttga cagttatatt atctgacgct
      541 agtgcgcctg gtgaaggaga acacaaaatc atggattaca ttagaagaca aagagcccag
      601 cctaaccatg acccaaatac tcatcattgt ttatgtggag ctgatgctga tctcattatg
      661 cttggtcttg ctacacatga acctaacttc accataatca gagaagaatt caaaccaaat
      721 aaacctaaac catgtgctct ttgtaatcag tttggacacg aggtcaagga ctgtgaaggt
      781 ttgcccagag aaaagaaggg gaagcatgat gaacttgcag atagtcttcc ttgtgcagaa
      841 ggggagttca tcttccttcg gctgaatgtc cttcgagagt atctggaacg agagctcacc
      901 atggccagct taccgttccc atttgatgtg gagaggagca tcgatgactg ggtgttcatg
      961 tgcttctttg tggggaatga tttccttcct cacttgccgt cactagagat tagggaaggt
     1021 gcaattgatc gtttggttaa catatacaaa aacgtggtac acaaaactgg gggttacctt
     1081 acagaaagtg gttatgtcaa tctacaaaga gtacagatga tcatgttagc agttggtgaa
     1141 gttgaggata gcatttttaa aaagagaaaa gatgatgagg acagttttag aagacgacag
     1201 aaagaaaaaa gaaagaggat gaagagagat caaccagctt ttactcctag tggaatatta
     1261 acaccttacg ctttgggttc aagaaattct ccaggttgtc aagtagccag taatccaaga
     1321 caagccgcct atgaaatgag gatgcagagt aactctagtc cttcaatatc ccctaataca
     1381 agttttgcat ctgatggctc cccatctcca ctaggaggac ttaagagaaa agcagaagat
     1441 agtgatagtg agccagagcc agaggataac gtcaggttat gggaagctgg ttggaagcag
     1501 cgatactaca agaacaaatt tgatgtagat gcagctgatg agaaattccg acgtaaggtt
     1561 gttcagtctt atgttgaagg attgtgctgg gttcttcgat attattacca gggctgtgct
     1621 tcctggaagt ggtattaccc attccattat gcgccgtttg cctcagactt tgaaggtatt
     1681 gcagacatgc cttctgaatt tgaaaagggc acaaaaccgt ttaaaccact ggaacagcta
     1741 atgggggttt ttccagctgc aagtggtaac tttttacctc caacatggcg gaagctcatg
     1801 agtgaccctg attctagtat aattgacttc tatcctgaag actttgctat tgatttgaat
     1861 gggaagaagt atgcatggca aggtgttgct ctgttgccat ttgtggatga gcgaaggctg
     1921 cgagcggccc tagaagaggt gtacccagac ctcactccag aagagaacag gagaaatagt
     1981 cttggaagtg atgttttgtt tgtgggaaaa gttcatccac tacacgactt cattttagag
     2041 ctgtatcaga caggttctac agagccagta gatgtgccgc ctgagttgtg tcacgggatt
     2101 caagggaagt tttctttgga tgaagaagcc atacttccag accaaacagt atgttcccct
     2161 gtgcccatgt tacgggactt gacacagaac actgcaatca gtattaattt taaagatcca
     2221 cagtttgcgg aagattatgt ttttaaagct ataatgcttc caggagcaag aaagccagca
     2281 gcagttctga aacccggaga ctgggaaaaa tccagcaatg ggcggcaatg gaaaccccag
     2341 cttggcttta accgggaccg gcggcctgtt cacctggacc aggcagcctt tagaacttta
     2401 ggccatgtta taccaagagg ctcagggact ggtgtttaca gcaacactgc acccccacct
     2461 gccaattacc aggggaacgt atacaggcca ctgctgagag gtcaagctca gatcccaaaa
     2521 ctaatgtcaa atatgaggcc ccaagataac tggcgaggtc ctcctcctct tttccagcag
     2581 cagagatttg acagaagtgt tggagctgaa cccctactgc cgtggaaccg aatgctccaa
     2641 acccaaaatg cagcctttca gccaaatcag taccagatgc tggctgggcc cggaggatat
     2701 ccacccagac gtgatgacca tcgaggaggg cgacagggat atcccagaga aggaaggaag
     2761 taccctttgc caccgccctc gggaagatac agttggaatt aggcttttgt aaagcttccc
     2821 acattccttt caccatttta cactttcatg ctatttgtgg aaaggtttct ttctcaagta
     2881 gtagttttta ataaaactat agtactttgt gtatttcttt taactgtgtg tatattttta
     2941 ctgatctgat ctcactgttt tatgttgctt tctagagatg tgtattgcat aatacagtgg
     3001 gtctgaattt attattgctt gtaaacacat ttgatgaaat taggagtcct gggttttcat
     3061 tatggttaaa actcaaaaca gctctatgct gattttaatg cacattaata attaggtatg
     3121 gacatttgaa ctgcacattc tgcagactag agcatatatt gttcaacatt tctttgaaaa
     3181 catttcatta aagtacttgt cttacagaaa tttgtggact ttagtaaaaa aaataaaaat
     3241 aaagctaaac tttaaaaatg
//
