LOCUS       XM_006240649            3040 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus X-ray repair cross complementing 3
            (Xrcc3), transcript variant X2, mRNA.
ACCESSION   XM_006240649
VERSION     XM_006240649.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006240649.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006240649.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3040
                     /gene="Xrcc3"
                     /note="X-ray repair cross complementing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     43 samples with support for all annotated introns"
                     /db_xref="GeneID:102551085"
                     /db_xref="RGD:1306849"
     CDS             832..1869
                     /gene="Xrcc3"
                     /codon_start=1
                     /product="DNA repair protein XRCC3 isoform X1"
                     /protein_id="XP_006240711.1"
                     /db_xref="GeneID:102551085"
                     /db_xref="RGD:1306849"
                     /translation="MDLDQLDLNPRITAAIKRGRLKSVKEVLCYSGPDLQRLTSLPSH
                     DVQLLLRAAALHLRGSRVLTALHLFQQRESFPEQHQRLSLGCPVLDQFLGGGLPLEGI
                     TGLAGRSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIEQLQE
                     LRTDVPGEVTQKIRFGNHIFIEHAADVDTLMECVSKRVPILLSRGMARLVVVDSIAAP
                     FRCEFHLQASAVRAKHLHSLGAALQRLSSTFRSPVLCINQVTEMVEDQESAGAWEERL
                     SPALGITWANQLLMQLMVDRIHEDSVTTGLPRSPARTLRVLFAPHLPLSSCCYTVSGE
                     GVRGMAGTESC"
ORIGIN      
        1 tgatcgctgg tagcgggacg tggggcggcg ggagagggcg gagggcaacg tgggtttcga
       61 gagccccagg ccggggctgg ggttcaagaa cgaacttccc ccgcggggca ccccttcagg
      121 cccgtagtgg ggtttggatc gaatcgagag tccggaccct ctccactgag cgcggaacct
      181 gctttcagca ccagtgtccc aggccagcca ctgcgtcgct gcaaacttga cctgtgactt
      241 ttttttcttg tggtgtttgt aaggacgggt ctcattgcgc atgtagccta ggctggcctt
      301 ggattcagca gtccttgcct cagccttcct tgtaccaaca gaggtgtgag ccaccgcgcg
      361 cacctcttct tctttgggta attggccaaa tcaactaccc aggagctttg ctcactctct
      421 gtcacagcct gctctgagaa acccgtctct gtcttctgag tgctgggatt actggcagcc
      481 caccatacct gcccagcacc agatctcagg tcctcagcct cctcactctt ggcactgcca
      541 gcctgagcca ccccaccccc atccttagtg tttcttggca ctgtcatttg aagccacgta
      601 taagatggac gtgcattgta gaacacgtct tccctcacac cgaccggact ggctctaacg
      661 tagacaggtg ggcggagaag aggcctggtg ctgtcctcgt cagctccctt tccgggggag
      721 gggaggtttc tccatgcttt ctgatgaggc agcaagttga cagcaagcgc gtgggagttt
      781 gtcaccattg ctgtgtaagc tctgcatgct catggtggac ccacggagga aatggacttg
      841 gatcagctgg acctaaaccc cagaattact gctgccatta aaaggggcag actgaagtca
      901 gtgaaggagg ttctgtgcta ctctggccca gacctgcagc ggctcaccag cctgcccagc
      961 cacgatgtgc agctcctgct gagagcagcc gctcttcacc ttcggggaag ccgcgtcctt
     1021 acagcactgc acctgttcca gcagagggag agcttccctg agcagcatca acgcctgagc
     1081 ctgggctgcc ctgtcctgga ccagttcctg ggtggaggcc tgcccctgga gggcatcact
     1141 ggcttggctg gccgaagctc agcaggaaag acccagctag ccctacagct ctgcctggct
     1201 gtgcagttcc cacggcaata cggaggcctg gaggccgggg ctgtctatat ctgcacagag
     1261 gatgccttcc ccagcaagcg gctgtggcag ctcattgaac agctgcagga gctgcggaca
     1321 gatgtgcctg gggaggtaac acagaagatc aggttcggca accacatctt cattgagcac
     1381 gcggctgacg tggacacctt gatggagtgt gtgagtaaga gggtccccat tctgctgtca
     1441 aggggcatgg cccgcctggt ggtggttgac tccattgcag ccccatttcg ttgtgagttc
     1501 catctccagg cctcggcggt cagggcgaag cacctgcact cgctgggggc cgcgcttcaa
     1561 aggctgagta gcaccttccg gagccccgtg ctgtgcatca accaggtgac agaaatggta
     1621 gaggaccagg agtctgcagg ggcttgggag gagcgcctct ctccagccct tggcatcacc
     1681 tgggctaacc agctcctgat gcaactgatg gttgaccgga tccatgagga cagtgttacc
     1741 acaggcttgc ccagaagccc agctcggact ctacgagtac tcttcgcccc ccacctcccc
     1801 ctctcctcct gctgctacac agtcagtggg gaaggagtta gagggatggc aggaactgag
     1861 tcctgctaac agtagggcca gtgcattagc ctgaccctga ttctgacgaa tccttccaac
     1921 aacctgtgtc agtccatggc acctggtgaa ctggctccca atgacggtca gtcagtatct
     1981 gctctctcct ccctggggtt cacctactgt tgagccttgg ggtttggcct cacactacct
     2041 gtcataggat gtccgaccaa caggggctct ggcagccctg ggaccccaga atgacttagc
     2101 tcttctctct gcctgggact ttcagcagct tggtggggcc tcctctcctg caggatgatc
     2161 ttaattcccc ccaaccccca ctacacacac acacacacac gcacacacac atccatacac
     2221 atgcatgcat gcacacacag taacacacac cactcaggtc aaacgtgact tgcagtgagg
     2281 tactcccccc accgtgcccc tccacacaca catacaacaa catttggggg cagagtggag
     2341 aaaatactct gaggaaggga aacggtgctg acctgattca gttgcctggg ctaagcagct
     2401 ttgggcaact tacaacaggg tctgtcctca ctgcggctgg ttagtgtgcc cagcaactct
     2461 ggcttggcag tgcatctagg ctgaaggcac cacagtgcac ccgacagcat ggagtgcaca
     2521 ctcagccagc ggcggacaag cgtcctggta agatctgctc tggactcaga atcaacaccc
     2581 tgtggacttg gggctcaaca gtcaccaatg aacgtgacct ctgaagacag ggctgtggtg
     2641 acaaagccct gtgcttcaag atcctgccac gtagcacagg ctcccaccag caaatgtgcc
     2701 aggtggagac tcaccagtgt gtgactcctc aaaccaggtc atacactgtc actgtcccca
     2761 ctcaaatatc gaaaatagtc cacttatggt atataccatg acatcttcag ggtggcccca
     2821 tcctcttctg agctcatcaa ccttccaaag gcccctgggg tactcccccc ccccccgccc
     2881 ccgcaattct gcactaaccc taagtctccg gcaggcaatg ccccacctgg gtctgagagg
     2941 ctgaggatac tgacataaat aaggggatcg tgtggagttt gtataaaaca gcttctcagg
     3001 gttttgtatt gggaaataaa actatttttg taacaaggta
//
