LOCUS       NM_001401047            5917 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus exportin for tRNA (Xpot), mRNA.
ACCESSION   NM_001401047 XM_006241399
VERSION     NM_001401047.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5917)
  AUTHORS   Kutay,U., Lipowsky,G., Izaurralde,E., Bischoff,F.R.,
            Schwarzmaier,P., Hartmann,E. and Gorlich,D.
  TITLE     Identification of a tRNA-specific nuclear export receptor
  JOURNAL   Mol Cell 1 (3), 359-369 (1998)
   PUBMED   9660920
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Feb 1, 2022 this sequence version replaced XM_006241399.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1553622.1,
                                           SRR26643288.30141.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-357               JAXUCZ010000007.1  59037146-59037502   c
            358-491             JAXUCZ010000007.1  59033847-59033980   c
            492-574             JAXUCZ010000007.1  59029918-59030000   c
            575-631             JAXUCZ010000007.1  59028443-59028499   c
            632-701             JAXUCZ010000007.1  59027922-59027991   c
            702-920             JAXUCZ010000007.1  59026268-59026486   c
            921-1105            JAXUCZ010000007.1  59025080-59025264   c
            1106-1274           JAXUCZ010000007.1  59024819-59024987   c
            1275-1511           JAXUCZ010000007.1  59022841-59023077   c
            1512-1550           JAXUCZ010000007.1  59020085-59020123   c
            1551-1613           JAXUCZ010000007.1  59019583-59019645   c
            1614-1738           JAXUCZ010000007.1  59017916-59018040   c
            1739-1883           JAXUCZ010000007.1  59017309-59017453   c
            1884-2003           JAXUCZ010000007.1  59017041-59017160   c
            2004-2098           JAXUCZ010000007.1  59016500-59016594   c
            2099-2168           JAXUCZ010000007.1  59015845-59015914   c
            2169-2407           JAXUCZ010000007.1  59014568-59014806   c
            2408-2693           JAXUCZ010000007.1  59012995-59013280   c
            2694-2883           JAXUCZ010000007.1  59011012-59011201   c
            2884-3000           JAXUCZ010000007.1  59009960-59010076   c
            3001-3116           JAXUCZ010000007.1  59009581-59009696   c
            3117-3164           JAXUCZ010000007.1  59008650-59008697   c
            3165-3236           JAXUCZ010000007.1  59004724-59004795   c
            3237-3293           JAXUCZ010000007.1  59002467-59002523   c
            3294-5917           JAXUCZ010000007.1  58997025-58999648   c
FEATURES             Location/Qualifiers
     source          1..5917
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..5917
                     /gene="Xpot"
                     /note="exportin for tRNA"
                     /db_xref="GeneID:314879"
                     /db_xref="RGD:1305562"
     exon            1..357
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            358..491
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     CDS             432..3320
                     /gene="Xpot"
                     /note="exportin, tRNA (nuclear export receptor for tRNAs)"
                     /codon_start=1
                     /product="exportin-T"
                     /protein_id="NP_001387976.1"
                     /db_xref="GeneID:314879"
                     /db_xref="RGD:1305562"
                     /translation="MDEQALLGLNPNADSDFRQRALAYFEQLKISPDAWQVCAEALAQ
                     KTYSDDHVKFFCFQVLEHQVKYKYSELSTAQQQLIRGTLLSWLQAQMLNPQPEKTFIR
                     NKAAQVFALLFVTEYLTKWPKFFFDILSVVDLNPRGVDLYLRILMAIDSELVDRDVVH
                     TSEEARRNTLIKDTMREQCIPNLVESWYQILHNYQYTNSEVLCQCLEVVGAYVSWIDL
                     SLIANDRFINMLLGHMSVEVLREEACDCLFEIVNKGMDPVDKMKLVESLCQVLQTAGF
                     FSIDQEEDLDFVARFSKLVNGMGQSLIVSWTKLIKNGAVKNAQEALEAIETKVPLMLQ
                     LLVHEDDDISSNIIGFCYDYLHILKQLSVLSDQQKANVEAIMLAVMKKLTYDEEYNFE
                     NEGEDEAMFVEYRKQLKLLLDRLAQVSPELVLASVRRVFSATLQNWQTTRFMEVEVAV
                     RLLYMLAEALPVSHGAHFSGDVSKASALQDMMRTLVTSGVSSYQHTSVTLEFFETVVR
                     YEKFFTVEPQHIPCVLMAFLDHRGLWHSSAKVRSRTAYLFSRFVKSLNKQMNPYIEDI
                     LNRIQDLLALSPPENGYQSLLSSDDQLFIYETAGALIVNSEYPAEHKQALMKDLLTPL
                     MERFKVLLEKLMMAQDEERQVSLADSLNHAVGFASRTSKAFSNKQTVKQCGCSQVYLD
                     CLQTFLPALSCPLQKDVLRSGVRTFLHRMIICLEEEVLPFIPSASEHMLKDCEAKDLQ
                     EFIPLINQITAKFKMQVSPFLQQMFMPLLHAIFEVLLRPAEDNDQSAALEKQMLRRSY
                     FAFLQTVTGSGMSEVIANQGAENVERVLVTVIQGAVEYPDPTAQKTCFIILSKLVELW
                     GGKDGPAGFADFVYKHIVPACFLAPLKQTFDLADAQTVLALSECAVTLKTIHLKRGPE
                     CVQYLQQEYLPSLQVAPEIIQEFCQALQQPDAKVFKNYLKVFFQRAKP"
     exon            492..574
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            575..631
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            632..701
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            702..920
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1105
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1274
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1511
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..1550
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1551..1613
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1614..1738
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1883
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            1884..2003
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            2004..2098
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            2099..2168
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            2169..2407
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            2408..2693
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            2694..2883
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            2884..3000
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            3001..3116
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            3117..3164
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            3165..3236
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            3237..3293
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
     exon            3294..5917
                     /gene="Xpot"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggccgtc tacactcttc ttccatgagg ctagggctgg cgccggtcct cgcggcacga
       61 cgcggggggc gtgcctcgcg ctgactcagc ggcggcgtta gcgggcccct gcgcagtttt
      121 ccttccaggg ccgccgactc cgcccgccgg cttgccaacc tgcccgcccc gctccgcgcc
      181 acgcaggaga aggcgcccgg ggaacgccga gcgcggagag gagcgcggcc cgggccggct
      241 ccggcgctag cgctgcggcc gtagtggagg actacagcga caaggacgag ggccgctctc
      301 cgtgctccct gcgtacggcg ccgctccttg cggctggccg acccctcggg agtgcagatg
      361 attgtggatc cttctgtggg attagaagcc acgtctgttg cgatcagaaa actccaggaa
      421 tagcggcaga gatggacgag caggctcttt tggggttaaa tccgaatgcc gattcagact
      481 ttagacaaag ggccctggct tattttgagc agttaaagat ttccccagat gcctggcagg
      541 tgtgtgcaga ggctctagca cagaagacat acagtgatga tcacgtaaag tttttctgct
      601 tccaagtttt agagcatcaa gttaaataca agtactcaga gctcagcact gctcagcaac
      661 agctcatcag ggggacgctt ctctcatggc ttcaggctca gatgctgaat ccccagccag
      721 agaagacctt catccgaaac aaagcagccc aagtcttcgc cttgctcttt gttacagagt
      781 atctcactaa atggcccaag tttttttttg acattctctc agttgtggac ctaaacccaa
      841 ggggagtgga tctgtacctg cgaatcctca tggccatcga ttcagagctg gtggaccggg
      901 atgtggttca tacatcagag gaggctcgca ggaatactct gataaaagat accatgaggg
      961 aacagtgcat tccaaatctg gtggaatcgt ggtaccagat tctacacaat taccagtata
     1021 ctaattcaga agtgctgtgc cagtgccttg aagtagttgg ggcttacgtc tcctggatag
     1081 acttatccct tatagccaat gataggttta taaatatgct gctaggtcat atgtcagtag
     1141 aagttctacg agaagaagca tgtgactgtt tgtttgaaat tgtaaataaa gggatggacc
     1201 ctgtggacaa gatgaaacta gtagaatcct tgtgtcaagt attgcagact gcggggtttt
     1261 tcagcattga tcaggaagaa gatttggact ttgtggccag attttctaag ctggtaaatg
     1321 gaatgggaca gtcgttaata gttagctgga ctaaattaat taagaatggg gctgtcaaga
     1381 atgctcaaga ggcactggaa gctattgaga ccaaagtgcc acttatgtta cagctgctag
     1441 ttcatgagga cgatgacatt tcctccaaca tcattgggtt ttgttacgat tatctccata
     1501 tcctgaaaca gctttcagtg ctctcggatc agcaaaaagc taatgtagag gcaatcatgt
     1561 tggccgttat gaaaaaattg acctatgatg aagaatataa ctttgaaaat gagggtgaag
     1621 atgaagccat gtttgtagaa tacagaaaac agctgaagtt actgttggac agacttgcgc
     1681 aggtgtcgcc agagctggtg ctggcttctg ttcgccgagt cttcagcgcc acgctgcaga
     1741 actggcagac cacgcgcttc atggaagttg aagtagcagt gagattgctg tacatgctgg
     1801 cggaagctct cccggtgtcc catggcgctc acttctcagg tgacgtgtca aaagcgagtg
     1861 ctttgcagga catgatgcgg acgttggtaa catcaggagt cagttcctac cagcacacat
     1921 ctgtgaccct ggagttcttt gaaactgtcg ttcgctatga gaagtttttc acagttgaac
     1981 ctcagcacat cccctgtgta ctaatggctt tcttagatca cagaggtctg tggcattcca
     2041 gtgctaaagt ccggagcaga actgcctacc tgttttctag atttgtcaag tctctcaata
     2101 aacaaatgaa tccttacatt gaggatatat tgaatagaat acaggattta ttagcccttt
     2161 ctccacccga gaatgggtac cagtccttgc tgagtagcga cgaccagctc ttcatttatg
     2221 aaacagccgg ggcgctgatt gttaacagcg aataccccgc agaacataag caggccttaa
     2281 tgaaggacct cttgacgcca ctgatggaga ggtttaaggt tctgttggaa aagctgatga
     2341 tggcccagga tgaagagaga caagtatctc ttgcagatag tctcaaccac gcggttggat
     2401 tcgccagtcg gaccagcaag gccttcagca acaagcagac tgtgaagcag tgcggttgct
     2461 cccaagtcta cctggactgt ttacagacgt ttttgccagc gctcagctgc cctttacaaa
     2521 aggacgttct ccgaagcggg gttcggacct tccttcatcg aatgatcatc tgcctagagg
     2581 aagaggttct tccgttcatc ccctctgcct cagagcacat gctcaaagac tgcgaagcga
     2641 aagacctcca ggagttcatt ccactcatca accagatcac cgccaagttc aagatgcagg
     2701 tgtccccatt cctacagcag atgttcatgc ccctgcttca tgccatcttt gaagtgctgc
     2761 tgcggcctgc ggaagacaat gaccagtcag cggcgttgga gaagcagatg ctgaggagga
     2821 gttacttcgc cttcctgcag acggtcactg gcagtgggat gagtgaagtg attgcaaatc
     2881 aaggtgcaga aaatgtggaa cgggtgctgg ttactgtcat ccaaggagct gttgagtatc
     2941 cagatccgac cgcacagaaa acatgtttta tcatcctctc aaagctggtg gagctctggg
     3001 gaggtaaaga cggaccagca ggctttgctg actttgtgta taagcacatc gtcccggcat
     3061 gtttcctggc ccctttaaag cagacctttg acctggcaga tgcacagaca gtattggcgc
     3121 tttctgagtg tgccgtgact ctgaaaacaa ttcatctcaa acggggcccc gaatgtgttc
     3181 agtatcttca gcaagaatac ctgccctcct tgcaagtcgc tccagaaata attcaggagt
     3241 tctgtcaagc acttcagcag cctgatgcta aagtttttaa aaattaccta aaggtgttct
     3301 tccagagagc aaagccctag gactggtcct ccccggcccc gccgtgatca ggagctccag
     3361 ttcataattt ataaagaagc agttcgtgtg taccatttac attggtcctg tacactgctt
     3421 ccagcatatt gcggtgtatg tgggattttc tgtaaaatgg gtgtaatttt tccctaaaga
     3481 aggtgtgtga caacaagaga ggttgcctgc atgccagttt aaattgttta tgtaaaaatg
     3541 ctgttataag acatagattt atcctagttc cttaattttt ttccttatat gaaactttaa
     3601 agttctttat aaaatacagc agtgcaaaac taacaagttg aacgtaaggt tggaaatgtt
     3661 cagttttatg tgtgcagaca cataagctat ggggtaacaa tcaaaacgta atcttttgta
     3721 gatagccatt acatttcttt aaactatttc aatgccaatg tatattctat aagagaatgg
     3781 gttcctaatt cagtcggttt aaaagcaggt gctggtgtta cacacttttt ataaaaaata
     3841 aattttacat agtgaaatat accaagtctt ttccggaatt attacagaga gcctcctttt
     3901 ctcaccttag ttattctgat cttcccccta acgatttgca aatgtgatgt gggtgccctg
     3961 tttcacagac tgccccagag ggaacacagg tcttttgaat gcactagaaa ccagctctgt
     4021 cagtctgtga taggatcata gagcccagtg tttttctata ttagatgtcc tcagaacaca
     4081 gcacacttgg actttttgtt tgtttgtttt tgtctagaga ctgggtctca ctatagaaca
     4141 gcctgcctcc cgtggggggg tggggtgctg gggagggctg ggaaagactg gaaagtccag
     4201 ccacacagct agaggcattt acattgaaat ctgtttctat tgtaatcgcc cagtgaaagg
     4261 gaaaaggatc agaagttaca ggtcattctc agccgcatag tgaatttgag gtcagcctgg
     4321 gcagcacgaa catctgtcta aaaatgcaat cagtaaaagc ctgaactctg ttgctaaggg
     4381 catattagtg gtgaggacca tccccagtgc cccagaacag gaggggacac aagatgtcag
     4441 gagagatttg ccttctcctt tgggctgttc cctaaaatct ttttaagtgt gtttgtgtgt
     4501 gcacatatgt gggggagaat aagaacctta cagggtcttc tacccagagg gatgtctgcc
     4561 ccagtcccag gttgcaggtg ttgactgcgc aggtttgcta tgggatccaa attcaggagc
     4621 catcttgttc atcgagcact ttgtctgctt gagcccccac ctcctgcccc ctagatttta
     4681 ttctaaattg tgcacacgaa tctttttctg attttaactc cacaagagat aggattttcc
     4741 ttcattataa aatgaaagca gtgaagtaaa ctgacaacta ggaatctatt tcatctacta
     4801 aatgatgaag atagtgaaat atatagtact tctataaata atgacttttt aaaaaaaaat
     4861 aggtaagtgc gccaggtttg gtggcttctg cctgtagtca cagcattcag aggggggcga
     4921 ggccagtctg ggctagagtg agactcagtt tcaaaaacaa caaaaagcaa gacaagcaaa
     4981 agtgggcatc tctttgctgt gcactgtggg agatgtaata gcatctgcgg gccacagtga
     5041 gattgtatga cgtattgtag tacttagcgg agcacagttg ttaaaagcgt gtataatgtg
     5101 gactctggat ccagattaag taggttcaaa caccacttaa caccggtaac tgattttagg
     5161 accttgagca agttaaataa cttcttcctg ccttggtttc ccagtcagaa acggaggtgc
     5221 agggaggggg gacaatggta gctacctcat aacttgttaa gaacccaatg aattaagata
     5281 caggtctcag tattagcttg tatttctgta ctatcgagtc cacacgtggc tctttaaagc
     5341 cctacagtgg gttcacatgt gtttagacct gaaaaatcag gacatggaaa tcagagtgta
     5401 tagataaaga atttcatgtt aatgtaatca tgtctaataa tcctcatctt cattccttga
     5461 gattacccaa gtatgatcat gatcaagaaa ccgttccgtc attaagtacc ttatttttac
     5521 aagcaggcac ccaaataatt gtctctaggg aatcttattt gttaagtgag aagacagagg
     5581 gttttatggt gcctgagtta gtcctgtgcc taagcagttg tttcagtctc catgcttgct
     5641 aatggtttca caagtggctt gattctctta gaaagtatta tgtggtattt taatgtgtat
     5701 cacttctgtg gtaaacatgt gaagtccttt ggcttagtca tgtttccccc cgtaactttt
     5761 gagctgtggg cttttctgtt ggaagaaact tggatggacc tgtcatgtca ttatcagaat
     5821 tgaaatagat ttcattgtaa gcaggaagtg catttgctgt tagaacggtt tcattgccta
     5881 aactgtttaa aattctaata aagtaacttt ctaagaa
//
