LOCUS       XM_006238035            1041 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus XPA, DNA damage recognition and repair
            factor (Xpa), transcript variant X1, mRNA.
ACCESSION   XM_006238035
VERSION     XM_006238035.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238035.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006238035.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1041
                     /gene="Xpa"
                     /note="XPA, DNA damage recognition and repair factor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:298074"
                     /db_xref="RGD:1308769"
     CDS             114..992
                     /gene="Xpa"
                     /codon_start=1
                     /product="DNA repair protein complementing XP-A cells
                     isoform X1"
                     /protein_id="XP_006238097.1"
                     /db_xref="GeneID:298074"
                     /db_xref="RGD:1308769"
                     /translation="MPVSPRSQAIPVVPCAWHIYGAELSVLQPLNKPAPSPTPAPSRT
                     APDPVFYMRRACFPAQSRLTPAEPRTLELTRLGVTSIKAAPKVIDTKGGFILEEEEEE
                     KHKIGDVVHEPGPVMEFDYTICEECGKEFMDSYLMNHFDLPTCDSCRDADDKHKLITK
                     TEAKQEYLLKDCDLEKREPALRFIVKKNPRHSQWGDMKLYLKLQVVKRALEVWGSQEA
                     LEDAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETTAHQHEYGPEEHLEEDMY
                     RKTCTLCGHELTYEKM"
ORIGIN      
        1 gccccctacg ggcgcgcgca tagccttcat ccggcgggtt tgggaccgca tccctagcct
       61 tcccactgcg tcttggcagc cgactccagc tcggtgtgcg ggaacagctg tgcatgcccg
      121 tatctccgcg gtcccaggcc atccctgtcg tgccctgtgc ttggcacatc tatggtgcag
      181 aactttcagt cttgcagcca ttaaacaagc ctgcaccgtc tcccactcca gcacccagta
      241 gaactgcccc agacccagtc ttttacatgc gccgcgcctg ctttccagcg caaagtagat
      301 taacacccgc agagccccgc actttggagt tgacacggct tggcgtgacc agcataaaag
      361 cagctcccaa agtgattgac accaaaggtg gcttcatttt agaagaggag gaagaagaga
      421 aacacaagat tggagatgtt gttcatgaac cagggcccgt catggagttt gattacacca
      481 tctgtgaaga gtgtgggaaa gagttcatgg actcgtatct tatgaaccac ttcgatttgc
      541 caacatgcga tagctgcaga gatgctgatg ataaacacaa gcttataacc aaaacagaag
      601 ccaagcaaga ataccttctg aaggactgtg atttagagaa aagagagcca gcgctcaggt
      661 tcattgtgaa gaagaaccct cgccattcac agtggggcga tatgaagctc tacttaaagc
      721 tacaggttgt aaagcgggct cttgaagttt ggggtagcca ggaagctctg gaagatgcaa
      781 aggaagtgag gcaggaaaac cgagaaaaaa tgaagcagaa gaagtttgat aaaaaagtaa
      841 aagaactgcg gcgagcagta agaagcagtg tatggaaaag agaaacaact gctcaccaac
      901 atgaatatgg accagaggaa catttagaag aggacatgta ccgcaagact tgtaccttgt
      961 gtggccacga actgacatat gaaaaaatgt gacttttaaa acaaatttat agacaaataa
     1021 agaccttgtt caaaagttcc a
//
