LOCUS       NM_001329890            3112 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus Xrcc1 N-terminal domain containing 1 (Xndc1),
            mRNA.
ACCESSION   NM_001329890 XM_006223432 XM_006229903
VERSION     NM_001329890.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169022.1.
            
            On or before Aug 4, 2016 this sequence version replaced
            XM_006229903.3, XM_006223432.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169022.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..3112
                     /gene="Xndc1"
                     /note="Xrcc1 N-terminal domain containing 1"
                     /db_xref="GeneID:102549471"
                     /db_xref="RGD:7692537"
     exon            1..284
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            285..459
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             415..1638
                     /gene="Xndc1"
                     /note="short transient receptor potential channel 2-like"
                     /codon_start=1
                     /product="putative short transient receptor potential
                     channel 2-like protein"
                     /protein_id="NP_001316819.1"
                     /db_xref="GeneID:102549471"
                     /db_xref="RGD:7692537"
                     /translation="MAPVKISHVVSFSSQDPKYPVENLLNPDSHKGPWLSCPRDKTGQ
                     LKVEFQLERAVPISYIDVGNCGCAFLQIDVGRSSWPLDRPFVTLLPATMLMSLTDSKE
                     GKNRSGVRMFKDDDFLIPASGESWDRLRLTCSQPFTRHQSFGLAFLRVRSSLDSLSDP
                     VKDPSSPGSSGLNQNSSDKLESDPSPWLTNPSIRRTFFPDPQTSTKEISALKGMLKQL
                     QPGPLGRAARMVLSAAHKAPPASVVSPNNSHGEPDSSHPERAEPRAEEPNRKNNASRG
                     KRRKVQEQRRPLSSSSSQPNRRATGRTKQRQQRPQAKSDGSGVQATGQCPICTGSFSI
                     EALPRHAATCGESSPPQPASPTSLSSSESVLWVSSPESSPPPSSWVQCPICELQFSAR
                     EIEEHASVCGEVFPA"
     exon            460..601
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            602..757
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            758..936
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1022
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1195
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1271
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1402
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1403..3088
                     /gene="Xndc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaaattta aataccactt gctaagggag gactgtagag cgtgaaaata tatattaaaa
       61 actcctgaac gtggggtttt gttgttttgt ttttagatgt aggatctgct gtacttcctc
      121 agtagaagtc atctttcaga aatagcggct tctttaggac tcaaaatccg ttttgggcta
      181 cagtgggaag gctagaaagg ggaggtcacg ggacggaatt ggcgggagaa taagatctga
      241 gcaccgaaac tgaagctact acgacatgaa gtttatggac gcgggagtaa tgtaaggact
      301 cttcttcttc caaaagctac caagagcaaa acatagaccg tgtcaccgtg gttacagaag
      361 acatcctggg aggaagcata tctgcctcgc aaataaagaa gctggtggcc tccgatggct
      421 cctgtgaaga tcagccatgt ggtgtcattt tcctctcagg atcccaaata tcctgtggag
      481 aacttgctga acccagacag tcataaggga ccttggctca gctgccctcg ggacaagact
      541 gggcaactga aagtggagtt tcagctggag agagcagtgc ccataagcta catcgatgtc
      601 ggtaactgtg gctgtgcttt tctacagatt gacgtgggtc gttcttcttg gcccctggac
      661 agaccttttg tcaccctgct ccctgcaacc atgctcatgt ccctcactga ctcaaaggag
      721 gggaagaacc gctcaggggt ccggatgttt aaagatgatg attttctgat tccagcctca
      781 ggagaatcat gggatcgact tcgattgacc tgctcccaac ctttcacacg tcatcaatcc
      841 tttggcctgg ccttcctccg agtacgttcc tctctggact ctctgtctga ccctgtaaag
      901 gatccctcat cccctgggag ctctgggctt aatcagaact cttctgataa gctggagtct
      961 gatcctagcc cctggctgac taatccttct atccggagga ccttcttccc agatccccag
     1021 acgagcacca aggaaatttc agcgctcaag ggtatgttga agcagttgca gccagggcct
     1081 ctggggcggg cagcccgcat ggtgctttct gctgcccata aggcacctcc agccagtgtc
     1141 gtaagcccaa acaatagcca tggagaacca gattccagtc atcccgagcg tgcagagccc
     1201 agagcagaag aaccaaacag gaagaacaat gcaagcagag ggaagaggag gaaagtccag
     1261 gagcaaagga gaccgttgtc cagctcaagc tctcagccaa ataggagggc aacaggaagg
     1321 acaaagcaaa gacagcaacg acctcaggcc aaaagtgatg gcagtggtgt gcaggctact
     1381 ggacagtgtc ccatttgtac aggttccttc agtattgagg ctcttccccg gcatgctgcc
     1441 acttgtggag agagctcccc accccagcca gcttctccta cctccttgtc ttcctcagag
     1501 tctgtgctgt gggtgtcttc cccagagagc tcgccgccac catcttcctg ggtccaatgc
     1561 cctatttgtg aattacagtt ctcggcaaga gaaatagaag aacatgccag cgtgtgtggg
     1621 gaagtttttc cagcctgagc agtgacattc tgctaaccct ttcttgatgt tggagcctgg
     1681 ggaatggatc tcttgtggct aagaagcatt ggtcccctcc cttctgtgat tacctcagga
     1741 ctctgcctgc ctgaggacac tttggaccca gcttgctccc cattcccgtt gccaaggctg
     1801 tgtcactatg gtacccaatt ctcataagga tattttcccc ttagaacata tttggtagaa
     1861 ttgatgatct ctccaaggcc ttagaacact atctagaatg tgatttccaa tgcccatttc
     1921 cctgaaagga aaacggaggc tcacctaggg ggaaatactg cctgaaaatt ataaagtcct
     1981 atgatggtct gggaagatga gtgagtcttg agcatgacac tgacactgag tcccatctga
     2041 ccttgacctt ctatatcttt catgggtgtc tgccccaggt gtaatcagat actgccctga
     2101 aacttcacac tacttaccat aggtgtggaa tggacgttca gtgacacaaa aacccctcac
     2161 agggttctta aaggaaccag agagatttcc ttctaaggaa taggcgtggc tgtaaaagtt
     2221 tgagcaaatc tcgttctaac tatttgagat agttggacca tagtgtctcc ccaaggtccc
     2281 ctggagctgc gatggtccaa ttctgctttg aagaattatg cacgcttccc ttttccccag
     2341 gagatgtctt catgtggcac taacacccgt cccccttatc cccaaggtac agggcaggga
     2401 gagagcagct ggtcctggtg aagggagggc ttggggtggg gccttgagtg ggaatgaaag
     2461 agcatgtgag ccgcagtcaa gggagaggca gagcaggagt tcaagccttc agcccctgcc
     2521 cacagaagtg ggtgcagcca tggatcccct ttcggtaaga gacccttgct tccctcccct
     2581 cctcatccca gtccccaggg ggatgcaggg acagcctgct gctgttggtg ggagagcccc
     2641 tggattcctg atccagggcc tagaagaaaa gagcagggag ctggacctgg tagaacagga
     2701 cgcaacagta ccaaggaggg gagatgctct ccaaggtaga aggcagagtg agagtatccg
     2761 gtggagggaa agcaccttaa ggtcctacta gagtctttca tagagaaagg gtttagggaa
     2821 agtgcagctt aaagaccctc tgtgtgggca tgtctgaact tgtccttcag agagatgagc
     2881 agctacaaga tgggaactgg attcctgtcg gatgtgtata ggttaggtgc ctagtgcggc
     2941 cccaaccacc tactttaatc acctctcttc agggaactaa cttgggccct gttatgtctg
     3001 atttttataa gaatggaagt gggctgagta aatactcccc atactagctt ttcctacatg
     3061 agtctacata ataaaatggt gaacaagaaa aaaaaaaaaa aaaaaaaaaa aa
//
