LOCUS       XM_219738               1626 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus X-linked lymphocyte-regulated 4A
            (Xlr4a), transcript variant X1, mRNA.
ACCESSION   XM_219738
VERSION     XM_219738.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_219738.10.
            
            On Jan 21, 2021 this sequence version replaced XM_219738.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1626
                     /gene="Xlr4a"
                     /note="X-linked lymphocyte-regulated 4A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:293841"
                     /db_xref="RGD:1565442"
     CDS             632..1318
                     /gene="Xlr4a"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated protein 3A isoform
                     X1"
                     /protein_id="XP_219738.6"
                     /db_xref="GeneID:293841"
                     /db_xref="RGD:1565442"
                     /translation="MFRIPVWHRETTVMASKIKGGPPKQPKVTPDLPSDNLQQLHENN
                     PGTNLAFETGGESTSSQETGGPKPGPSKKSFNERKRRYVLNVSHTVQNIEWKIDHFLK
                     LQHEQRQKLYQDYSHQFLTLAVMWNIDVEQVKKHAEKLSNILDEQQKLFQQFQGIHMQ
                     KIEEFKELCDRHLKNLQAIKRCRRKAIVEEARKQMGCLERKLTEETVHVKQQEEREGN
                     QSPLLSLLFS"
ORIGIN      
        1 gactcacctg tgaagttctg gagtctcact tcaacctggg actgaacaag gcccccgagg
       61 gtggttggga aagggatctg agggctaaag gtcccgggag gactgagcag gacaatgtgg
      121 agggtggtag gtgaagtgag tacctacagt tcgtaaccct ttgcctgtca ttagctttca
      181 tggaccgctg ggtgctgtga ggtgtgccta gaatctattt ggtgaataca actctcaaaa
      241 gtgctgcata cagtcagaaa cagttcattt tcatacagtg acagtgggtg tttctgacca
      301 gatactagca ccaagtatct ggagtgagga ggtgggaccc tggctcatgt cacctgagca
      361 gtgaggagca gactaaggtt tggggtgggg tagggaaacc ccccatttta cccttggcat
      421 gggaaagatg ggactgaggg gctgggactg gacacttgca ggtttgaggg gtttgtttgc
      481 ttgtttttgt ttttgttttt ttgatccctt cctgttcctc cagcacaagt agaaaggaac
      541 actcaggtcc atctccaagg aaacctgata cctgttcctg tggttttcat ttaactcttc
      601 cttgtatctt taatgtgtct ttgcacatac aatgttcagg attcctgtct ggcacaggga
      661 gactacagtc atggcatcca aaatcaaggg cggacctccc aagcaaccaa aggtgactcc
      721 tgatctgcca tctgacaatt tacagcaact acatgaaaat aacccaggaa ccaatctggc
      781 ctttgaaact ggtggggaaa gcacttcttc ccaagaaaca ggtggaccaa agccagggcc
      841 tagtaagaaa tcttttaatg aaaggaagag aaggtatgtg ctgaatgtaa gtcatactgt
      901 ccagaacatt gagtggaaaa ttgaccactt cctaaaactc cagcatgaac aaaggcagaa
      961 actttatcag gactattctc atcagttttt gactttggct gtgatgtgga atatagatgt
     1021 agagcaagtc aagaagcatg ccgaaaaact ctccaatata cttgatgagc aacaaaagct
     1081 ttttcaacaa tttcaaggta ttcatatgca gaaaatagaa gaatttaagg agttatgtga
     1141 tcgacactta aagaatctac aggctattaa gaggtgtcgc cgaaaagcta ttgttgagga
     1201 agccaggaaa caaatgggct gcttggaaag gaaacttact gaagaaactg ttcatgtaaa
     1261 gcagcaggaa gaaagggaag gcaatcagtc accacttcta tccttgttat tctcataata
     1321 ccttgaagaa ggaagctcaa gcaccagaat aagtttctat gacatgatta ttttctgaat
     1381 ccatgatgac atgaaacaaa ttctaatgaa tatgaatcct tgttcacaac tgtgagggga
     1441 cagaagaacg ttactgagaa tgttttggtt ttttgaaatt tattgcgcat gtagagtact
     1501 tgatcatcag ggatatatca ggtctcctgt acagttaaat ctcatgtcct gtgacttcct
     1561 gtatgtatac cctgggagtt ctttacttgg caacatttga tttaataaac atgaaatcgt
     1621 ttcaga
//
