LOCUS       NM_001396398            2669 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus XK related 5 (Xkr5), mRNA.
ACCESSION   NM_001396398 XM_039094742
VERSION     NM_001396398.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Oct 14, 2021 this sequence version replaced XM_039094742.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.56514.1,
                                           SRR21887623.2517766.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000016.1  77577479-77577563
            86-269              JAXUCZ010000016.1  77579705-77579888
            270-454             JAXUCZ010000016.1  77585407-77585591
            455-664             JAXUCZ010000016.1  77586714-77586923
            665-834             JAXUCZ010000016.1  77588330-77588499
            835-946             JAXUCZ010000016.1  77590625-77590736
            947-2669            JAXUCZ010000016.1  77593655-77595377
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..2669
                     /gene="Xkr5"
                     /note="XK related 5"
                     /db_xref="GeneID:497083"
                     /db_xref="RGD:1359335"
     exon            1..85
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..2055
                     /gene="Xkr5"
                     /note="X Kell blood group precursor-related family, member
                     5; XK, Kell blood group complex subunit-related family,
                     member 5; X-linked Kx blood group related 5"
                     /codon_start=1
                     /product="XK-related protein 5"
                     /protein_id="NP_001383327.1"
                     /db_xref="GeneID:497083"
                     /db_xref="RGD:1359335"
                     /translation="MHAGLLGLSALLQAAEQSARLCSIVYYFATGRLFWGWLALSVLL
                     PGFLVQALSFLWFQADGHQGPWWLAVLHLLQLGVWKRHWDSVAMALWKGKEAPSWGQL
                     HLQEADLSALRLLEALLQTGPHLLLQVYVFLASDFTDVVPGISALLSWSSLSWALVSY
                     NRFLGIMKPGHRTMLWAALLCQQLWRMGMLGARVLTLVLFCRVYRVWVLVVGGAHWLV
                     MTFWLVAQQSDIVESTCHWRLFNLLVGAVFILCYINFWDSPSRSRMASFYLVMLLENS
                     ILLLLATDFLQGAPWTSLWTVVGVLSGFLIGCASLVVYYSLLHPKSSDIQENFMRKCC
                     GPIENNKSDSEPPPRAMVPTGERPDSSSWCQEKSYELTSLDKAPSPGKSTAELRLEEQ
                     RSGEDSFFSHHHWLLLKLALKTGSISKINAALGGDSPGCSCPPRLGSSQHCDLQRKPL
                     FSQQDLPSSPRDPLTLEKGPEYVGAPKAEMESLETSSYISFASDLEDNATTQKPPATQ
                     EDSPKAGTKADLAAQGKDTDGPLKGKEGQESTTLYFSATMDRTTCHQKGSPVALRTSH
                     LGTLGESRPVQPALPQAVTKPFPVALANISPIPGRNFCPDAGLPGRAPESSEWEEWED
                     PAKNPSTQSSLPKVRLRAAEEPCVTSTPKSESIQRDYNCRDRVKQEVSFFI"
     exon            86..269
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
     exon            270..454
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
     exon            455..664
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
     exon            665..834
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
     exon            835..946
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
     exon            947..2669
                     /gene="Xkr5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggcacagg cagcagcagc tcggaagatg cacgcggggc tcctggggct ctctgccctg
       61 ctgcaggcgg ccgagcaaag cgcgcgcctc tgctccatag tttactactt tgccacaggt
      121 cgtctcttct gggggtggct ggccctttct gtcctcctgc ctggcttctt ggtccaggcc
      181 ctgagctttc tgtggtttca agcagatggg catcagggtc cctggtggct ggcagtgctg
      241 catcttctgc agcttggcgt ctggaagcgg cactgggact ctgtggcaat ggccctgtgg
      301 aaggggaagg aggctcccag ctggggacag ctgcacctgc aggaggctga cctgtcagcc
      361 ctgcggctcc tggaggctct gctgcagaca gggccccacc tgctgcttca ggtgtacgtg
      421 ttcctggcct ctgacttcac agacgtcgtg ccaggaatca gcgccctgct ttcctggtct
      481 tcactgtcct gggctctcgt gtcatacaac cgtttcctgg gcatcatgaa gccaggccac
      541 cgtaccatgc tgtgggctgc tctcttgtgc cagcagctct ggaggatggg catgctgggt
      601 gctcgtgtgc tgaccctggt tctgttctgc agagtttacc gtgtttgggt tttggtggtc
      661 ggaggtgctc actggctggt gatgactttc tggcttgtag cccagcagag cgacattgtg
      721 gagagcacct gccactggag actgttcaat ctgctggtgg gggccgtgtt catcctctgc
      781 tacatcaact tctgggacag cccttccaga agtaggatgg ccagcttcta cttggtcatg
      841 ctgctggaga actccatact cttactactg gccactgact ttctgcaggg agcaccatgg
      901 accagcctgt ggactgtggt gggggtcttg tctggatttc tgattgggtg tgcatcattg
      961 gttgtttatt atagcctact acaccctaag tcctcggaca tccaggagaa cttcatgagg
     1021 aaatgctgtg gccccataga aaataacaaa tctgactcag agcctcctcc cagagccatg
     1081 gttcccacag gggagaggcc agacagctca agctggtgcc aagagaaaag ctatgagcta
     1141 acaagtctag ataaggcccc cagcccaggg aagagtactg cggagttacg gctggaggag
     1201 cagagatctg gggaagactc tttctttagc caccaccact ggctgttgct gaaactcgct
     1261 ctcaagacag gaagtatatc taagatcaac gcagccctcg gaggtgacag ccctggctgc
     1321 tcctgtcccc ccaggttggg gtcgagtcaa cactgtgatc tgcagaggaa acccctgttt
     1381 tcccagcaag acctcccatc ctctcctcgt gaccctttga ccttggagaa agggcctgag
     1441 tacgtaggag ctccgaaagc agaaatggag tcactggaaa cttcgagcta tatctccttt
     1501 gccagtgacc tcgaggacaa tgcaacaacc cagaagccac cagctacaca ggaggacagt
     1561 ccaaaggctg ggaccaaggc tgacctggca gctcagggga aggatacaga tggtcccctg
     1621 aaggggaagg aaggacagga gagcacaaca ctgtatttca gtgccaccat ggacaggacc
     1681 acatgccacc aaaagggcag cccagtagct ctgcggacat cccacttggg gactttggga
     1741 gaaagcagac ctgtgcagcc tgcactgcct caggcagtca ctaagccctt tcctgttgcc
     1801 ttggccaaca ttagtcccat tccaggcaga aacttctgcc ccgatgcagg gctccctgga
     1861 agagccccag agagttcaga gtgggaggag tgggaggacc ctgctaagaa cccgagtaca
     1921 cagagctcat tgccaaaggt gaggctgagg gctgcggaag agccctgtgt cacgtctacc
     1981 cctaagtcgg agtctatcca aagggactac aactgcaggg acagggtgaa gcaggaggtg
     2041 agttttttca tctgacccta gccatggtag aataagacaa caggttaata tatcaacatc
     2101 gtgggaagag aaatcctaca cgggaccatc cgtgtccctc tacttctgat acctgaaaag
     2161 atgaaggcat gggattggat agtgtctaaa actccctcct acatgtcaca catcacacgt
     2221 agcactgatg cacagcaaaa ctcacgggca gtggggagag gcaaaggggc ttccaggtcc
     2281 ctctgtgagc ttcttgaacg ctagcgcgtc tcttcgtggc ttctaaaaaa atgcagaggt
     2341 aaaactcagg aatccaattg catcctgggt cctttataat caacggttcc tcacattgga
     2401 tggttattct tcactaattt tttaatgatt ttggggacgg aggagatggc cagcagttaa
     2461 ggcagctgcc tgctcttcca gtggacccag gttcaattaa ttccctgtac ctatttggca
     2521 gctcatagcc acgtgtgact tctgtcccgg agagacaaca gtctcttccg gcctctgtgg
     2581 gcactgcaca cgcatgattc acagccatat aggcaggcag aatacaccta cgcctaatat
     2641 ttttaaaaat aaaagcgtgt ttccccata
//
