LOCUS       NM_001011971            3992 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus XK related 4 (Xkr4), mRNA.
ACCESSION   NM_001011971 XM_232646
VERSION     NM_001011971.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3992)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 23, 2021 this sequence version replaced NM_001011971.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.530917.1,
                                           SRR26360190.439399.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1243              JAXUCZ010000005.1  20694433-20695675
            1244-1443           JAXUCZ010000005.1  20942108-20942307
            1444-3992           JAXUCZ010000005.1  21078031-21080579
FEATURES             Location/Qualifiers
     source          1..3992
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q12"
     gene            1..3992
                     /gene="Xkr4"
                     /gene_synonym="XRG4"
                     /note="XK related 4"
                     /db_xref="GeneID:297801"
                     /db_xref="RGD:1549780"
     exon            1..1243
                     /gene="Xkr4"
                     /gene_synonym="XRG4"
                     /inference="alignment:Splign:2.1.0"
     CDS             447..2390
                     /gene="Xkr4"
                     /gene_synonym="XRG4"
                     /note="X Kell blood group precursor related family member
                     4; XK, Kell blood group complex subunit-related family,
                     member 4; X-linked Kx blood group related 4"
                     /codon_start=1
                     /product="XK-related protein 4"
                     /protein_id="NP_001011971.2"
                     /db_xref="GeneID:297801"
                     /db_xref="RGD:1549780"
                     /translation="MAAKSDGRLKMKKSSDVAFTPLQNSDHSGSVQGLAPGLPSGTGA
                     EDTEAAGGGCCPDGGGCSRCCCCCAGSGGSAGSGGSSGGGPGGGAGSAALCLRLGREQ
                     RRYSLWDCLWILAAVAVYFADVGTDIWLAVDYYLRGQRWWFGLTLFFVVLGSLSVQVF
                     SFRWFVHDFSTEDSATTTASTCQQPGADCKTVVSSGSAAGEGEARPSTPQRQASNASK
                     SNIAATNSGSNSNGATRTSGKHRSASCSFCIWLLQSLIHILQLGQVWRYLHTIYLGIR
                     SRQSGESSRWRFYWKMVYEYADVSMLHLLATFLESAPQLVLQLCIIVQTHSLQALQGF
                     TAAASLVSLAWALASYQKALRDSRDDKKPISYMAVIIQFCWHFFTIAARVITFALFAS
                     VFQLYFGIFIVLHWCIMTFWIVHCETEFCITKWEEIVFDMVVGIIYIFSWFNVKEGRT
                     RCRLFIYYFVILLENTALSALWYLYKAPQIADAFAIPALCVVFSSFLTGVVFMLMYYA
                     FFHPNGPRFGQSPSCACDDPATAFSMPPEVATSTLRSISNNRSVASDRDQKFAERDGC
                     VPVFQVRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSP
                     SPPRLQYKDDALIQERLEYETTL"
     exon            1244..1443
                     /gene="Xkr4"
                     /gene_synonym="XRG4"
                     /inference="alignment:Splign:2.1.0"
     exon            1444..3992
                     /gene="Xkr4"
                     /gene_synonym="XRG4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcctctccc tcggagtcag ctggtggagg agaggctgcg ggaggaggga gcgcgcgcga
       61 ggggaggaga ggaatgtgca ggtccgagga gcgccgcggc ggccgctgct gctcctgctg
      121 ctggcggcgg cggcggctcg tgctgcagcc gcggggccgg gctggcgcgg agcgcgggcg
      181 gctgtcaggg gcgcgcgcgg gccggagcga gcagctgggc tcggcgcagg cagccaggcg
      241 gcgcacctgc gggtcccgag cgtgcggcta gccgggccca gcgcccagcc ccgcgggcgg
      301 cggcgggcga gcgggcgctg gagtaggagc aggagagcgg cgcgaccggg gaaggaagcc
      361 ggggcaaggc gaggaggtgg cgggaggagg agacagtagg gacaggtgtc agataaagaa
      421 gggctctcct ccgctgccga ggcatcatgg ccgctaagtc agacgggagg ctgaagatga
      481 agaagagcag cgacgtggcg ttcaccccgc tgcagaactc ggaccattcg ggctcggtgc
      541 aaggactggc tccaggtttg ccgtcgggga ccggagctga ggacacggag gcggcgggag
      601 gcggctgctg cccagacggc ggcggttgct cacgctgctg ctgctgctgc gcggggagcg
      661 gcggctcggc gggctcgggc ggctccagcg gcggcggccc gggcggcggg gcgggctcgg
      721 cggcgctgtg cctgcgcctg ggcagggagc agcggcgcta ctcgctgtgg gactgcctct
      781 ggatcctagc cgccgtggcc gtgtacttcg cggatgttgg aacggacatc tggctcgctg
      841 tggactacta cctgcgcggc cagcgctggt ggtttgggct caccctcttc ttcgtggttc
      901 tgggctcgct ctctgtgcaa gtgttcagct tccgctggtt tgtgcacgat ttcagcaccg
      961 aggacagcgc cacgaccacc gcctccacct gccagcagcc tggagcggat tgcaagaccg
     1021 tggtcagcag tgggtctgca gccggggaag gcgaggctcg tccttccacg ccgcagaggc
     1081 aagcatccaa cgccagcaag agcaacatcg ccgccaccaa cagcggaagc aacagcaacg
     1141 gggccaccag gaccagcggc aaacacaggt ctgcgtcctg ctccttctgc atctggctcc
     1201 tgcagtcact catccacatc ttgcagctcg ggcaagtctg gaggtatttg cacacaatat
     1261 acttaggtat ccggagccgg cagagcgggg agagcagtag gtggcggttt tactggaaga
     1321 tggtgtacga gtatgcagat gtgagcatgc tgcacctgct ggccaccttt ctggaaagtg
     1381 cgccacaact ggtcctgcag ctctgcataa ttgtacagac tcacagctta caggccctcc
     1441 aaggttttac agcagcagcc tcccttgtgt ccttggcttg ggccctagcc tcctaccaga
     1501 aggctcttcg ggactcccga gatgacaaaa agcctatcag ctacatggct gtcatcatcc
     1561 agttctgctg gcatttcttc accattgctg ccagggtcat cacattcgcc ctctttgcct
     1621 cggttttcca gctgtatttt gggatattca ttgtcctcca ctggtgcatc atgaccttct
     1681 ggattgtcca ctgtgagaca gaattctgta tcaccaaatg ggaagagatt gtgtttgaca
     1741 tggtggtggg tatcatctac atcttcagtt ggttcaatgt caaggaaggc aggacacgct
     1801 gcaggctgtt catttactat tttgtaatcc ttttggaaaa tacagccttg agtgcactct
     1861 ggtacctcta caaagctccc cagattgcgg atgcatttgc catccctgca ttgtgcgtgg
     1921 ttttcagcag ctttttaaca ggtgtcgttt ttatgctgat gtactatgcc ttcttccatc
     1981 ccaatgggcc cagatttggg cagtcaccaa gttgtgcttg tgacgaccct gccactgcct
     2041 tctctatgcc tccagaagta gccacaagca cactacggtc catctctaac aaccgcagtg
     2101 ttgccagtga ccgtgatcag aaatttgcag agcgggatgg atgtgtacct gtgtttcagg
     2161 tgagaccaac tgcaccacct actccatcat ctcgaccacc gcggattgaa gaatcagtca
     2221 ttaaaattga cctgttcagg aatagatatc cagcatggga gagacatgtg ttggaccgaa
     2281 gcctgagaaa ggccatttta gcctttgaat gttccccatc tcctccaagg ctgcagtaca
     2341 aagacgatgc ccttattcag gagaggctgg aatatgaaac cactttataa aacacaaaga
     2401 accgtaatgt ccatataaag gggtaacagc agggctgagg caataatgac accttatcca
     2461 agagtagggc aatgagctat atgttcttag tccaaacatt gtcacggtat ggtttgatct
     2521 tccatcagct gactgcctgc tgccggtgag cattcaagcc agtagtgctg agagtttctt
     2581 actccgctga aaggggcgat gtcagcttag tatgactgtt gctacaaatt cctccagcac
     2641 aggcttgggg cacattcact ggaggataac attattgtga ggaaatgttg cctctaatca
     2701 ttagggtatt ttaatggagt ttactaatct ttgcataaat atgttcatac caccaccacc
     2761 accacccctc tatcaaagga gttaaggtgg agctggagag atgactcagt agttaagagc
     2821 actgactgct cttgcaaaga acccaggctt gagccccagc atccatttga tagttcacta
     2881 caactctaat tccagaatat ccaatgccca tttttggcct cctcaggcac tgcactcaca
     2941 tggtgcacag acatatatgc aggcaaaata cccatacaca taaaataaaa ataaatctcc
     3001 aaaaacaaaa caaaacaaaa acaaaaaaaa gtttaggtga tttccttgat gcaaagctca
     3061 caacagactc caagaagaaa gcaacatgct tggaatgacc ctagaaacca ttctctcctt
     3121 tgcaaaccag tagcatcaat gacaaaacct gtgcagtgga cagcaagact caagtgttta
     3181 cactgatact agcatcgatg ggatgattct ttttctacgc atttcaggat ttgtttttta
     3241 cttttaagtt ttgcagatga gaacattctt tatgacagaa atcctatgca gcacatgtat
     3301 ggcttttgaa gagaccaagg agctcaatat tcatccgtga tgtaaattaa atgctaatca
     3361 tgattcagta ttcaattgca aaaataaaat ttatatacaa agagccatgg cgggagggac
     3421 agaatgagaa tcagattctc aggtgtgtgc atctcctatt gaaatacacc cacaaagcca
     3481 cggtcgagaa aaagggactg tttccaggtc tgtttctagg tgcaggatga gcacgggtca
     3541 gcaggtgtga ttccggaaac cacatgccac acctttctag tgccaaactt cgttcaatca
     3601 cagaactgat acggtattcc cccagactga gaataagtgg tgtcccaaaa cagacaagga
     3661 cagaataatc aggttcttgg ctgtatacag acttaccctc ttcccatcca aggtcaaagc
     3721 gatgtgtcta ctagagactt tgggacacct tttagcaagc gagtgcatac agatgcaatg
     3781 tgtatgctat caaaaataaa aactgcctgg actgcttgag ggcttaccac tccatcagct
     3841 aagatttgta tgtgaatcat ctgtaaagtt gtgcttttac aagcttctga gttttaaata
     3901 cctccataca gcaagtaaac attcccgctt tctgttcttg gtgtcattgg tcatggtgct
     3961 ttttgttgca ttaaaagtgc cggtcaaact tt
//
