LOCUS       XM_017596154            6738 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus xin actin-binding repeat containing 1
            (Xirp1), transcript variant X3, mRNA.
ACCESSION   XM_017596154
VERSION     XM_017596154.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596154.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596154.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6738
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6738
                     /gene="Xirp1"
                     /note="xin actin-binding repeat containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 1 long SRA read, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910104"
                     /db_xref="RGD:1304776"
     CDS             649..6117
                     /gene="Xirp1"
                     /codon_start=1
                     /product="xin actin-binding repeat-containing protein 1
                     isoform X1"
                     /protein_id="XP_017451643.1"
                     /db_xref="GeneID:100910104"
                     /db_xref="RGD:1304776"
                     /translation="MADAQMQVVHTPTIQMRTGEDLPLPPPSALEGLPPPPPKESFSK
                     FQQQRQANELRRLYKHIHPELRKNLEEAVAEDLAKVLGSEEPTEGDVQCMRWIFENWS
                     LDAIGDHERPAGKEPVSGGNVQATSRKFEEGSFTNSSDLEPGPQLSGGDVRATRQLFE
                     TKSLDALTGQEEATQMTMKEPAVSGDVQGTRKLFETKPLDMLGSCPSIQDQSPLELRS
                     EIQELKGDVKKTVKLFQTEPLCAIQDAEGAIHEVKAACREEIQSNAVRSARWLFETRP
                     LDAFNQDPSQVRVIRGISLEEGALPDVSATRWIFETQPLDAIREILVDEKDFQPSPDL
                     IPPGPDVQHQRHLFETCALDTLKGERETEAEAPAKEEVIPGDVRSTLWLFETKPLDAF
                     RDQVQVGHLQRVDHQKGEGPVIECLSSNGTSALPLSQGVPQNNGPKGDVKTFKNLFET
                     LPLDSIGQGEPSACGNINRGQRTDSTGLSEGADAPVYAMQDSRGQLHALTSVSREQVV
                     GGDVQGYKWMFETQPLDRLGRSPSTVDVVRGITRQEVVAGDVGTTRWLFETQPLEMIH
                     QQEQQKREEEEGRGPGGPPPELPQKGDVQTIRWLFETYPMSELAEKQESEVTGPVSKA
                     EAQSCTWMFGSQSLNQAEGSGEQHLQTSQVQAGDRQTDSHVFETESLSAQGQSSGRKP
                     VRYCSRVEIPSGQVSRQKEVFQALEAGKRGVQETVLSPGSIPTGSVHKFTWLFENCPM
                     GSLAAESVSGGNLQEEQPKVSADPGTPERQETAAERTLRTLHATPGILHHGGILMEAR
                     GPGELCLAKYVLPSPGQGRPCVQKEELVCGELPRIVRQVLGRTDVDQQGLLVQEDTAG
                     QLRLHPLKLPGPGDPENIEDMDPELQQLLACGLGVSMAKTGLVMQETGQGLVALTAYS
                     LQPQPTSRGPERSSVQLLASCIDKGELHSLPSLRWEPPTDSSSVPVTEETQRLPPTES
                     IIRVTPLDSTMKMGHLRVSGSTPCPPLPRAAGKVVLPNGRPGAPLQEARKQVDISHAG
                     QKGKAASGRPEGTIAPPLGSGAPNLQEAMQNLRLATAEAQSLHQQVLSRHAQGSDPAA
                     TSISAQDVLQVPTPTTTQGSIMPVAGRDARITAVPRKVSGDNKAVPRGLPRGRVTIQD
                     GIYAAHPVRTSDLPGAIQPSEKEPQPRDSPPQADQGQSPRPEYHEPGGHSQRAWGPLG
                     KVMPQIWPECLQAADTSLKTVPLTHHTLTPKPQAAGDSLHSHNASPPTLPAAVTEEPD
                     HPAQGHHQKDSVQQASKPLREPLLHSHNRPAGQKTLEGSETKLSKAESTVLPRKKPPV
                     PPKPAHLSQVHPPHRLPKPLAASASISEAGQDHKPGEPGVANPGSAKAPTIAGQGCLP
                     LAECSKGQKQPMRQYPLSTTASRPSGGQTSNSNSQSPESRKLTILNNDNDVSPPQKHP
                     SSPKQQPMDGSKQRTPESPEIVQGSHQELQGLLSQVQTLEKEAAHTVNVQTLRKLFEG
                     APQLAGGTRQVPTAPHKTEVSVEQAFGELTRVSSKVAQLKEQTLARLLDIEETVHKAL
                     SSIFSFQSEGHTSSPPQGSAKDLGVKKVSTSNRARPMGSNQVKEPPAVENQEKVESRP
                     EAQGQDEIRNHAEARGQAAVNVLPSRRLETARAEPGLQQVSPSCRGSSSPTFISIQSA
                     AKTLLDASSPQGSHSISGKNTHLAQDISQALLYQRDIQDQAGTKEMAIKGSVPTGQQE
                     NVLEFQTGSATSKSYGATKTVTEQYEEMDQFGNTVLTSSTTITQQAEPLMDPRPQLGL
                     YTFPMLRQFLHSPSRFNSDLAGAEIPWVPCSHFHPAAQ"
ORIGIN      
        1 atccgaatgt gaccagtggg caggctgctg ccgaagaggg gtccgaggtg gaggtgggtg
       61 gtcctgagta gtcggcagtg cgaagtcagt gtctcagcac aggggaccta ggcacagttt
      121 ttgaaactta ctgtatccta aacctgcccc caaacctgcc tttacgtggc gcaggccaga
      181 tgagtgtaca gttgggaagg ccaggagcct acaagcctgc ctcagccttt tctgagacct
      241 cagctgagcc gccatgggca gcccctgtcc ctcgatgggc ttctgtatcc cctaacaaca
      301 ggccattaga ttggatcatt ggcctctgtg gatccttgtc tgacctcttt ggcctctgtg
      361 accctagcaa ggattctgga attcctggga gtctgggttg ggggcagctg gtgatctgta
      421 taggaagtct gcccaggcct ccctcatggt gacctgatag agcagaagtg gggacagcat
      481 gggtttgtgt gtggtctcct actcagagct cagagacaag agggaccacc cagaggtttt
      541 gcttggggct ccataagggg atgtcagatc ttgcttcctc tggactctca tatcctcgat
      601 gggcaggcca cgggcaagca gccctccctt ctcctgcttc tgagaaggat ggccgatgcc
      661 cagatgcagg tagttcatac accaaccatc caaatgagga ctggagagga cctgcccctt
      721 ccccctccct cagccctaga gggtctgccg ccaccgcccc ccaaagaatc tttctccaag
      781 ttccagcagc agcggcaagc caacgagctt cgccgtctct acaaacacat ccaccctgag
      841 cttcggaaga acctcgagga ggctgtagcc gaggacctgg ccaaggtact cggttcggag
      901 gagcccaccg agggcgatgt gcaatgtatg cgctggatct ttgagaactg gagtttggat
      961 gccattggcg accacgagag gccagctggc aaggagcctg tgtcaggtgg caacgttcag
     1021 gccacctctc ggaagtttga ggaaggctcc tttaccaaca gctcagatct ggagccagga
     1081 ccccagctgt cagggggtga cgtccgagct accagacagc tgtttgagac caagtcactg
     1141 gatgcactga caggccagga agaggcaaca cagatgacca tgaaggaacc tgcagtctct
     1201 ggagatgtac agggaaccag aaaactcttt gagactaagc ccctcgacat gctgggctcc
     1261 tgcccctcta tccaggacca gagcccttta gagctgcgct cagagattca ggagctgaag
     1321 ggtgatgtga agaagacggt gaagctgttt cagacggagc ctctatgtgc catccaggat
     1381 gcagagggcg ccatccatga agtcaaggct gcctgtcggg aggagatcca gagcaatgca
     1441 gtgaggtcag ctcgctggct ctttgagacc cgacctctgg acgccttcaa ccaggacccc
     1501 agccaggtga gggtgattcg ggggatctcc ctcgaggagg gagccctgcc cgacgtcagt
     1561 gcaactcgct ggatcttcga gacgcagcct ctggatgcca ttcgtgagat cttggtggac
     1621 gagaaggact tccagccatc tccagatctc atccctcctg gtccagacgt tcagcatcag
     1681 cgacatctgt ttgagacctg cgccctggac actctgaagg gagaaagaga aaccgaggca
     1741 gaggctccag ccaaggagga ggtgattcct ggtgacgtcc gctctacact ctggctgttt
     1801 gaaacaaaac ccctggatgc tttcagagac caggtccaag tgggtcacct gcaacgggtg
     1861 gatcaccaga agggtgaggg gcctgtgata gagtgtctgt ccagtaacgg cacttcagcg
     1921 ctgcctctgt ctcagggtgt cccccagaac aatgggccga aaggggatgt gaaaaccttc
     1981 aagaatcttt ttgagaccct tcccttagac agcattgggc agggtgagcc ttcagcctgt
     2041 ggaaacataa acagaggaca aaggactgat tctactgggc tgtccgaggg cgccgatgcc
     2101 cccgtatatg ctatgcagga cagcagagga cagcttcatg ccctgacttc tgtcagcaga
     2161 gagcaggtag ttggaggtga tgtacaaggc tacaagtgga tgtttgagac acagcccctg
     2221 gaccggctgg gcagaagccc cagtaccgtg gatgtggtgc gaggcatcac ccggcaagaa
     2281 gtggtggctg gggatgtagg caccactcgg tggctctttg agacgcaacc actggagatg
     2341 atccaccaac aagagcagca gaagcgagag gaggaggagg ggaggggtcc aggaggcccc
     2401 cctcctgagc tcccccagaa gggcgatgta caaaccatcc gctggctatt tgagacctac
     2461 cctatgagcg agttggcaga gaagcaggaa tctgaggtca caggccctgt gagcaaggca
     2521 gaggcacagt catgcacctg gatgtttggg tcccaatctc tgaaccaggc agagggctct
     2581 ggggagcagc acttgcaaac cagccaggtc caggctggag acagacagac agacagccat
     2641 gtctttgaga ctgaatctct gtcagcccag ggccagtcca gtgggagaaa gcctgtaagg
     2701 tactgcagcc gagtggagat tccttccggg caggtatctc ggcagaaaga agttttccaa
     2761 gccctggaag caggcaagag gggggtacag gagactgttt taagccccgg atccatcccc
     2821 acaggctccg tgcataaatt cacctggctc tttgaaaact gccccatggg ctccctggca
     2881 gcagagagtg tcagtggggg caacctccag gaagaacagc ccaaagtctc tgcagaccct
     2941 gggaccccag agaggcagga gacagcagcc gagagaaccc ttcggacttt gcatgccacc
     3001 cctggcatcc tgcaccacgg agggatcctc atggaagccc gagggccagg ggagctctgc
     3061 cttgccaagt atgtgctccc aagcccaggg caggggcgcc cctgtgtaca gaaggaggag
     3121 ctggtgtgcg gtgagctccc caggatcgtc cgtcaagtgc tgggccggac agatgtggac
     3181 cagcagggac tgctggttca ggaggacaca gctggccaac tccgactcca cccactcaaa
     3241 ctgccagggc ctggtgaccc tgagaatatt gaagacatgg acccggagct ccagcagctg
     3301 ctggcctgtg gcctgggagt ctctatggca aagacggggc tggtgatgca agaaacagga
     3361 cagggcctag tggcattgac tgcctactcc ctccagcccc agccaaccag caggggccct
     3421 gaaagaagca gtgtgcagct gctggccagc tgcatagaca aaggagaact gcacagcctt
     3481 cccagtttgc ggtgggagcc gccaacagac tcaagttcag taccagttac tgaggagacc
     3541 cagaggcttc ccccaactga gagcatcata cgcgtcaccc cattagactc caccatgaag
     3601 atggggcatc tgagagtctc aggatccaca ccctgcccac ctctacctcg ggcagctgga
     3661 aaagtggtcc ttccaaatgg gagaccggga gcaccattgc aggaagcaag gaagcaagtg
     3721 gatatcagcc atgctgggca gaaagggaag gcagcctcag gaagaccaga aggaaccatt
     3781 gctcctcctt tagggtctgg ggctccaaat ctccaggagg ccatgcaaaa tctgcgtttg
     3841 gcaactgctg aggcccaaag cctgcaccag caggttctga gcaggcatgc acagggctct
     3901 gaccctgcag ccacctccat atctgctcaa gatgttctgc aagtgccgac tcctaccact
     3961 acccaaggta gcatcatgcc tgtggctgga agggacgcca ggatcacagc ggtccccaga
     4021 aaggtcagtg gagacaacaa agcagtcccc agagggctgc ctagggggcg ggtgaccata
     4081 caggatggta tctatgctgc tcaccctgtg agaacctctg acctacctgg ggccatccag
     4141 ccttctgaaa aagaacccca gccaagggac agcccacccc aggcagacca aggtcagagt
     4201 cccaggccag aatatcacga gcctgggggt cactcacaaa gggcttgggg acctctgggg
     4261 aaagtgatgc cacaaatctg gcctgagtgc ctccaggcag cagacacctc cctgaagact
     4321 gtccctctaa ctcaccacac tctgacacct aaaccccagg ctgcaggtga cagcctgcac
     4381 tcccataatg cctctcctcc tactctccca gctgctgtga cagaagaacc agaccaccca
     4441 gctcaaggcc accaccagaa ggactccgtc cagcaggcct ccaagcccct gcgggaaccc
     4501 cttcttcaca gtcacaacag acctgctggc cagaaaaccc ttgaagggtc agagacaaag
     4561 ctctctaaag cggaatccac tgtgcttcca agaaagaaac ccccagtgcc tccgaaacct
     4621 gcccatctaa gccaagtcca cccacctcat aggctgccca agcccttagc agcctctgcc
     4681 agcatctcag aagcaggaca agaccataag ccaggtgagc caggtgtagc caaccctggg
     4741 tcggccaaag ctcccacaat agcaggtcag ggctgcctgc ccctggctga gtgctccaag
     4801 gggcagaaac agcctatgcg ccagtatcca ctcagcacca cagcttccag acctagcggg
     4861 ggccaaacaa gcaacagcaa cagccagagc cctgagtctc gcaagttgac cattctcaac
     4921 aatgacaatg acgtcagccc accacaaaag caccctagct ccccaaaaca gcagcctatg
     4981 gatggttcca agcagaggac ccctgagagc ccagagattg ttcagggcag ccatcaagag
     5041 ctccagggcc tcctgagcca agtgcaaacc ctggagaagg aagcagccca caccgtgaat
     5101 gtgcagaccc tgcggaagct ctttgagggt gcaccccagc tggcaggggg tacccgtcag
     5161 gttcccacag ctcctcacaa gactgaggtc tcagtggagc aggcctttgg ggagctaact
     5221 cgggtgagtt caaaggttgc ccagctgaaa gaacagaccc tagccaggct gctggacatc
     5281 gaagaaacag tgcacaaggc tctgagctcc atatttagct tccagtccga gggtcacaca
     5341 agcagccctc cacagggaag tgcaaaggat ctcggtgtga aaaaggtctc caccagtaac
     5401 agagccagac cgatgggctc caaccaggtc aaagagccac ctgcagtcga aaaccaagaa
     5461 aaggttgaga gccgtcctga ggcgcaaggt caagatgaga ttagaaatca tgcagaggcc
     5521 agaggtcagg cagcagtgaa tgtcctgccc tccaggaggc tggagacggc aagagccgag
     5581 cctggcctcc aacaagtctc accttcctgc aggggatcct cctctccaac tttcatctct
     5641 atccaatcag ctgcaaagac gcttctagat gcttccagcc ctcagggaag ccattctatc
     5701 tcagggaaaa atacacacct agctcaggac ataagccaag ccctgctcta ccagagagat
     5761 atccaggatc aggctgggac aaaggagatg gccatcaagg gctctgtgcc cacagggcag
     5821 caagagaatg ttctggaatt ccagactggg tctgctacct ccaagtccta tggagccacg
     5881 aaaacagtga ctgaacagta tgaggagatg gaccaatttg ggaatacagt cctcacttcc
     5941 tccaccacca tcacccagca ggcagagcct ctgatggacc ccaggcccca actcgggctc
     6001 tacacttttc ccatgctaag gcagttcctc cacagtccct ccaggttcaa cagcgacctg
     6061 gctggtgccg agataccatg ggttccctgt agccacttcc atccggctgc ccagtgagcc
     6121 cctctgtctc cccccagtct tgggttcctc ccccagagct ctaggactga gtcacgggcc
     6181 tacctccagg acatgtggaa caatgaccaa gaaaaacggg gccttcggag agctgatgag
     6241 ggctgtttgc cttgttcgtt ccaattcttg ggaagggaca agaaaagtaa agcagccatc
     6301 cacaggaaag ctggatgggt aggacaggac ctgacaggtg gttgtggaga tctagcccac
     6361 actagcccag ctcacattcg cacattcgag tctgcatctt attgcctaga gctggataga
     6421 cacccctcca ctgtgtccct ctatggccag cctttctctt aggttatgga atgtggctac
     6481 ctcaatccct ggtgaggacc cggggctgag cagactggac atgacattgg tctctatttg
     6541 agattggact gaaggttcca gaaaaacctg ggtgctgcct cttcatcacc agtggtccaa
     6601 agggcactga gagaacgcta gcagccaata gtgttcctag cagccgaata caccaccctt
     6661 cctgatccca tcaccccccc actctgcacc cccaatggga aaaatgaccc aaaaataaac
     6721 ccaaaagaga ttctctgc
//
