LOCUS       XM_008766701            6294 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus xin actin-binding repeat containing 1
            (Xirp1), transcript variant X2, mRNA.
ACCESSION   XM_008766701
VERSION     XM_008766701.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008766701.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008766701.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6294
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6294
                     /gene="Xirp1"
                     /note="xin actin-binding repeat containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 1 long SRA read, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910104"
                     /db_xref="RGD:1304776"
     CDS             205..5673
                     /gene="Xirp1"
                     /codon_start=1
                     /product="xin actin-binding repeat-containing protein 1
                     isoform X1"
                     /protein_id="XP_008764923.1"
                     /db_xref="GeneID:100910104"
                     /db_xref="RGD:1304776"
                     /translation="MADAQMQVVHTPTIQMRTGEDLPLPPPSALEGLPPPPPKESFSK
                     FQQQRQANELRRLYKHIHPELRKNLEEAVAEDLAKVLGSEEPTEGDVQCMRWIFENWS
                     LDAIGDHERPAGKEPVSGGNVQATSRKFEEGSFTNSSDLEPGPQLSGGDVRATRQLFE
                     TKSLDALTGQEEATQMTMKEPAVSGDVQGTRKLFETKPLDMLGSCPSIQDQSPLELRS
                     EIQELKGDVKKTVKLFQTEPLCAIQDAEGAIHEVKAACREEIQSNAVRSARWLFETRP
                     LDAFNQDPSQVRVIRGISLEEGALPDVSATRWIFETQPLDAIREILVDEKDFQPSPDL
                     IPPGPDVQHQRHLFETCALDTLKGERETEAEAPAKEEVIPGDVRSTLWLFETKPLDAF
                     RDQVQVGHLQRVDHQKGEGPVIECLSSNGTSALPLSQGVPQNNGPKGDVKTFKNLFET
                     LPLDSIGQGEPSACGNINRGQRTDSTGLSEGADAPVYAMQDSRGQLHALTSVSREQVV
                     GGDVQGYKWMFETQPLDRLGRSPSTVDVVRGITRQEVVAGDVGTTRWLFETQPLEMIH
                     QQEQQKREEEEGRGPGGPPPELPQKGDVQTIRWLFETYPMSELAEKQESEVTGPVSKA
                     EAQSCTWMFGSQSLNQAEGSGEQHLQTSQVQAGDRQTDSHVFETESLSAQGQSSGRKP
                     VRYCSRVEIPSGQVSRQKEVFQALEAGKRGVQETVLSPGSIPTGSVHKFTWLFENCPM
                     GSLAAESVSGGNLQEEQPKVSADPGTPERQETAAERTLRTLHATPGILHHGGILMEAR
                     GPGELCLAKYVLPSPGQGRPCVQKEELVCGELPRIVRQVLGRTDVDQQGLLVQEDTAG
                     QLRLHPLKLPGPGDPENIEDMDPELQQLLACGLGVSMAKTGLVMQETGQGLVALTAYS
                     LQPQPTSRGPERSSVQLLASCIDKGELHSLPSLRWEPPTDSSSVPVTEETQRLPPTES
                     IIRVTPLDSTMKMGHLRVSGSTPCPPLPRAAGKVVLPNGRPGAPLQEARKQVDISHAG
                     QKGKAASGRPEGTIAPPLGSGAPNLQEAMQNLRLATAEAQSLHQQVLSRHAQGSDPAA
                     TSISAQDVLQVPTPTTTQGSIMPVAGRDARITAVPRKVSGDNKAVPRGLPRGRVTIQD
                     GIYAAHPVRTSDLPGAIQPSEKEPQPRDSPPQADQGQSPRPEYHEPGGHSQRAWGPLG
                     KVMPQIWPECLQAADTSLKTVPLTHHTLTPKPQAAGDSLHSHNASPPTLPAAVTEEPD
                     HPAQGHHQKDSVQQASKPLREPLLHSHNRPAGQKTLEGSETKLSKAESTVLPRKKPPV
                     PPKPAHLSQVHPPHRLPKPLAASASISEAGQDHKPGEPGVANPGSAKAPTIAGQGCLP
                     LAECSKGQKQPMRQYPLSTTASRPSGGQTSNSNSQSPESRKLTILNNDNDVSPPQKHP
                     SSPKQQPMDGSKQRTPESPEIVQGSHQELQGLLSQVQTLEKEAAHTVNVQTLRKLFEG
                     APQLAGGTRQVPTAPHKTEVSVEQAFGELTRVSSKVAQLKEQTLARLLDIEETVHKAL
                     SSIFSFQSEGHTSSPPQGSAKDLGVKKVSTSNRARPMGSNQVKEPPAVENQEKVESRP
                     EAQGQDEIRNHAEARGQAAVNVLPSRRLETARAEPGLQQVSPSCRGSSSPTFISIQSA
                     AKTLLDASSPQGSHSISGKNTHLAQDISQALLYQRDIQDQAGTKEMAIKGSVPTGQQE
                     NVLEFQTGSATSKSYGATKTVTEQYEEMDQFGNTVLTSSTTITQQAEPLMDPRPQLGL
                     YTFPMLRQFLHSPSRFNSDLAGAEIPWVPCSHFHPAAQ"
ORIGIN      
        1 agctgcctga ctggcagaga acagagactg agagccaagg tagagaggcg ttggacccag
       61 gagcagaaca gaactaacaa agaaccccag cagagcaaca gaccccgagg ctagacaccc
      121 aaaagcaccc agacaccagc cagacccttg ggcttcctct caagaaacct gagatctcgg
      181 gaaagagaga agagaggcag aaggatggcc gatgcccaga tgcaggtagt tcatacacca
      241 accatccaaa tgaggactgg agaggacctg ccccttcccc ctccctcagc cctagagggt
      301 ctgccgccac cgccccccaa agaatctttc tccaagttcc agcagcagcg gcaagccaac
      361 gagcttcgcc gtctctacaa acacatccac cctgagcttc ggaagaacct cgaggaggct
      421 gtagccgagg acctggccaa ggtactcggt tcggaggagc ccaccgaggg cgatgtgcaa
      481 tgtatgcgct ggatctttga gaactggagt ttggatgcca ttggcgacca cgagaggcca
      541 gctggcaagg agcctgtgtc aggtggcaac gttcaggcca cctctcggaa gtttgaggaa
      601 ggctccttta ccaacagctc agatctggag ccaggacccc agctgtcagg gggtgacgtc
      661 cgagctacca gacagctgtt tgagaccaag tcactggatg cactgacagg ccaggaagag
      721 gcaacacaga tgaccatgaa ggaacctgca gtctctggag atgtacaggg aaccagaaaa
      781 ctctttgaga ctaagcccct cgacatgctg ggctcctgcc cctctatcca ggaccagagc
      841 cctttagagc tgcgctcaga gattcaggag ctgaagggtg atgtgaagaa gacggtgaag
      901 ctgtttcaga cggagcctct atgtgccatc caggatgcag agggcgccat ccatgaagtc
      961 aaggctgcct gtcgggagga gatccagagc aatgcagtga ggtcagctcg ctggctcttt
     1021 gagacccgac ctctggacgc cttcaaccag gaccccagcc aggtgagggt gattcggggg
     1081 atctccctcg aggagggagc cctgcccgac gtcagtgcaa ctcgctggat cttcgagacg
     1141 cagcctctgg atgccattcg tgagatcttg gtggacgaga aggacttcca gccatctcca
     1201 gatctcatcc ctcctggtcc agacgttcag catcagcgac atctgtttga gacctgcgcc
     1261 ctggacactc tgaagggaga aagagaaacc gaggcagagg ctccagccaa ggaggaggtg
     1321 attcctggtg acgtccgctc tacactctgg ctgtttgaaa caaaacccct ggatgctttc
     1381 agagaccagg tccaagtggg tcacctgcaa cgggtggatc accagaaggg tgaggggcct
     1441 gtgatagagt gtctgtccag taacggcact tcagcgctgc ctctgtctca gggtgtcccc
     1501 cagaacaatg ggccgaaagg ggatgtgaaa accttcaaga atctttttga gacccttccc
     1561 ttagacagca ttgggcaggg tgagccttca gcctgtggaa acataaacag aggacaaagg
     1621 actgattcta ctgggctgtc cgagggcgcc gatgcccccg tatatgctat gcaggacagc
     1681 agaggacagc ttcatgccct gacttctgtc agcagagagc aggtagttgg aggtgatgta
     1741 caaggctaca agtggatgtt tgagacacag cccctggacc ggctgggcag aagccccagt
     1801 accgtggatg tggtgcgagg catcacccgg caagaagtgg tggctgggga tgtaggcacc
     1861 actcggtggc tctttgagac gcaaccactg gagatgatcc accaacaaga gcagcagaag
     1921 cgagaggagg aggaggggag gggtccagga ggcccccctc ctgagctccc ccagaagggc
     1981 gatgtacaaa ccatccgctg gctatttgag acctacccta tgagcgagtt ggcagagaag
     2041 caggaatctg aggtcacagg ccctgtgagc aaggcagagg cacagtcatg cacctggatg
     2101 tttgggtccc aatctctgaa ccaggcagag ggctctgggg agcagcactt gcaaaccagc
     2161 caggtccagg ctggagacag acagacagac agccatgtct ttgagactga atctctgtca
     2221 gcccagggcc agtccagtgg gagaaagcct gtaaggtact gcagccgagt ggagattcct
     2281 tccgggcagg tatctcggca gaaagaagtt ttccaagccc tggaagcagg caagaggggg
     2341 gtacaggaga ctgttttaag ccccggatcc atccccacag gctccgtgca taaattcacc
     2401 tggctctttg aaaactgccc catgggctcc ctggcagcag agagtgtcag tgggggcaac
     2461 ctccaggaag aacagcccaa agtctctgca gaccctggga ccccagagag gcaggagaca
     2521 gcagccgaga gaacccttcg gactttgcat gccacccctg gcatcctgca ccacggaggg
     2581 atcctcatgg aagcccgagg gccaggggag ctctgccttg ccaagtatgt gctcccaagc
     2641 ccagggcagg ggcgcccctg tgtacagaag gaggagctgg tgtgcggtga gctccccagg
     2701 atcgtccgtc aagtgctggg ccggacagat gtggaccagc agggactgct ggttcaggag
     2761 gacacagctg gccaactccg actccaccca ctcaaactgc cagggcctgg tgaccctgag
     2821 aatattgaag acatggaccc ggagctccag cagctgctgg cctgtggcct gggagtctct
     2881 atggcaaaga cggggctggt gatgcaagaa acaggacagg gcctagtggc attgactgcc
     2941 tactccctcc agccccagcc aaccagcagg ggccctgaaa gaagcagtgt gcagctgctg
     3001 gccagctgca tagacaaagg agaactgcac agccttccca gtttgcggtg ggagccgcca
     3061 acagactcaa gttcagtacc agttactgag gagacccaga ggcttccccc aactgagagc
     3121 atcatacgcg tcaccccatt agactccacc atgaagatgg ggcatctgag agtctcagga
     3181 tccacaccct gcccacctct acctcgggca gctggaaaag tggtccttcc aaatgggaga
     3241 ccgggagcac cattgcagga agcaaggaag caagtggata tcagccatgc tgggcagaaa
     3301 gggaaggcag cctcaggaag accagaagga accattgctc ctcctttagg gtctggggct
     3361 ccaaatctcc aggaggccat gcaaaatctg cgtttggcaa ctgctgaggc ccaaagcctg
     3421 caccagcagg ttctgagcag gcatgcacag ggctctgacc ctgcagccac ctccatatct
     3481 gctcaagatg ttctgcaagt gccgactcct accactaccc aaggtagcat catgcctgtg
     3541 gctggaaggg acgccaggat cacagcggtc cccagaaagg tcagtggaga caacaaagca
     3601 gtccccagag ggctgcctag ggggcgggtg accatacagg atggtatcta tgctgctcac
     3661 cctgtgagaa cctctgacct acctggggcc atccagcctt ctgaaaaaga accccagcca
     3721 agggacagcc caccccaggc agaccaaggt cagagtccca ggccagaata tcacgagcct
     3781 gggggtcact cacaaagggc ttggggacct ctggggaaag tgatgccaca aatctggcct
     3841 gagtgcctcc aggcagcaga cacctccctg aagactgtcc ctctaactca ccacactctg
     3901 acacctaaac cccaggctgc aggtgacagc ctgcactccc ataatgcctc tcctcctact
     3961 ctcccagctg ctgtgacaga agaaccagac cacccagctc aaggccacca ccagaaggac
     4021 tccgtccagc aggcctccaa gcccctgcgg gaaccccttc ttcacagtca caacagacct
     4081 gctggccaga aaacccttga agggtcagag acaaagctct ctaaagcgga atccactgtg
     4141 cttccaagaa agaaaccccc agtgcctccg aaacctgccc atctaagcca agtccaccca
     4201 cctcataggc tgcccaagcc cttagcagcc tctgccagca tctcagaagc aggacaagac
     4261 cataagccag gtgagccagg tgtagccaac cctgggtcgg ccaaagctcc cacaatagca
     4321 ggtcagggct gcctgcccct ggctgagtgc tccaaggggc agaaacagcc tatgcgccag
     4381 tatccactca gcaccacagc ttccagacct agcgggggcc aaacaagcaa cagcaacagc
     4441 cagagccctg agtctcgcaa gttgaccatt ctcaacaatg acaatgacgt cagcccacca
     4501 caaaagcacc ctagctcccc aaaacagcag cctatggatg gttccaagca gaggacccct
     4561 gagagcccag agattgttca gggcagccat caagagctcc agggcctcct gagccaagtg
     4621 caaaccctgg agaaggaagc agcccacacc gtgaatgtgc agaccctgcg gaagctcttt
     4681 gagggtgcac cccagctggc agggggtacc cgtcaggttc ccacagctcc tcacaagact
     4741 gaggtctcag tggagcaggc ctttggggag ctaactcggg tgagttcaaa ggttgcccag
     4801 ctgaaagaac agaccctagc caggctgctg gacatcgaag aaacagtgca caaggctctg
     4861 agctccatat ttagcttcca gtccgagggt cacacaagca gccctccaca gggaagtgca
     4921 aaggatctcg gtgtgaaaaa ggtctccacc agtaacagag ccagaccgat gggctccaac
     4981 caggtcaaag agccacctgc agtcgaaaac caagaaaagg ttgagagccg tcctgaggcg
     5041 caaggtcaag atgagattag aaatcatgca gaggccagag gtcaggcagc agtgaatgtc
     5101 ctgccctcca ggaggctgga gacggcaaga gccgagcctg gcctccaaca agtctcacct
     5161 tcctgcaggg gatcctcctc tccaactttc atctctatcc aatcagctgc aaagacgctt
     5221 ctagatgctt ccagccctca gggaagccat tctatctcag ggaaaaatac acacctagct
     5281 caggacataa gccaagccct gctctaccag agagatatcc aggatcaggc tgggacaaag
     5341 gagatggcca tcaagggctc tgtgcccaca gggcagcaag agaatgttct ggaattccag
     5401 actgggtctg ctacctccaa gtcctatgga gccacgaaaa cagtgactga acagtatgag
     5461 gagatggacc aatttgggaa tacagtcctc acttcctcca ccaccatcac ccagcaggca
     5521 gagcctctga tggaccccag gccccaactc gggctctaca cttttcccat gctaaggcag
     5581 ttcctccaca gtccctccag gttcaacagc gacctggctg gtgccgagat accatgggtt
     5641 ccctgtagcc acttccatcc ggctgcccag tgagcccctc tgtctccccc cagtcttggg
     5701 ttcctccccc agagctctag gactgagtca cgggcctacc tccaggacat gtggaacaat
     5761 gaccaagaaa aacggggcct tcggagagct gatgagggct gtttgccttg ttcgttccaa
     5821 ttcttgggaa gggacaagaa aagtaaagca gccatccaca ggaaagctgg atgggtagga
     5881 caggacctga caggtggttg tggagatcta gcccacacta gcccagctca cattcgcaca
     5941 ttcgagtctg catcttattg cctagagctg gatagacacc cctccactgt gtccctctat
     6001 ggccagcctt tctcttaggt tatggaatgt ggctacctca atccctggtg aggacccggg
     6061 gctgagcaga ctggacatga cattggtctc tatttgagat tggactgaag gttccagaaa
     6121 aacctgggtg ctgcctcttc atcaccagtg gtccaaaggg cactgagaga acgctagcag
     6181 ccaatagtgt tcctagcagc cgaatacacc acccttcctg atcccatcac ccccccactc
     6241 tgcaccccca atgggaaaaa tgacccaaaa ataaacccaa aagagattct ctgc
//
