LOCUS       XM_006244155            3725 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus xin actin-binding repeat containing 1
            (Xirp1), transcript variant X5, mRNA.
ACCESSION   XM_006244155
VERSION     XM_006244155.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244155.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244155.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3725
                     /gene="Xirp1"
                     /note="xin actin-binding repeat containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 18 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100910104"
                     /db_xref="RGD:1304776"
     CDS             208..3591
                     /gene="Xirp1"
                     /codon_start=1
                     /product="xin actin-binding repeat-containing protein 1
                     isoform X2"
                     /protein_id="XP_006244217.1"
                     /db_xref="GeneID:100910104"
                     /db_xref="RGD:1304776"
                     /translation="MADAQMQVVHTPTIQMRTGEDLPLPPPSALEGLPPPPPKESFSK
                     FQQQRQANELRRLYKHIHPELRKNLEEAVAEDLAKVLGSEEPTEGDVQCMRWIFENWS
                     LDAIGDHERPAGKEPVSGGNVQATSRKFEEGSFTNSSDLEPGPQLSGGDVRATRQLFE
                     TKSLDALTGQEEATQMTMKEPAVSGDVQGTRKLFETKPLDMLGSCPSIQDQSPLELRS
                     EIQELKGDVKKTVKLFQTEPLCAIQDAEGAIHEVKAACREEIQSNAVRSARWLFETRP
                     LDAFNQDPSQVRVIRGISLEEGALPDVSATRWIFETQPLDAIREILVDEKDFQPSPDL
                     IPPGPDVQHQRHLFETCALDTLKGERETEAEAPAKEEVIPGDVRSTLWLFETKPLDAF
                     RDQVQVGHLQRVDHQKGEGPVIECLSSNGTSALPLSQGVPQNNGPKGDVKTFKNLFET
                     LPLDSIGQGEPSACGNINRGQRTDSTGLSEGADAPVYAMQDSRGQLHALTSVSREQVV
                     GGDVQGYKWMFETQPLDRLGRSPSTVDVVRGITRQEVVAGDVGTTRWLFETQPLEMIH
                     QQEQQKREEEEGRGPGGPPPELPQKGDVQTIRWLFETYPMSELAEKQESEVTGPVSKA
                     EAQSCTWMFGSQSLNQAEGSGEQHLQTSQVQAGDRQTDSHVFETESLSAQGQSSGRKP
                     VRYCSRVEIPSGQVSRQKEVFQALEAGKRGVQETVLSPGSIPTGSVHKFTWLFENCPM
                     GSLAAESVSGGNLQEEQPKVSADPGTPERQETAAERTLRTLHATPGILHHGGILMEAR
                     GPGELCLAKYVLPSPGQGRPCVQKEELVCGELPRIVRQVLGRTDVDQQGLLVQEDTAG
                     QLRLHPLKLPGPGDPENIEDMDPELQQLLACGLGVSMAKTGLVMQETGQGLVALTAYS
                     LQPQPTSRGPERSSVQLLASCIDKGELHSLPSLRWEPPTDSSSVPVTEETQRLPPTES
                     IIRVTPLDSTMKMGHLRVSGSTPCPPLPRAAGKVVLPNGRPGAPLQEARKQVDISHAG
                     QKGKAASGRPEGTIAPPLGSGAPNLQEAMQNLRLATAEAQSLHQQVLSRHAQGSDPAA
                     TSISAQDVLQVPTPTTTQGSIMPVAGRDARITAVPRKLL"
ORIGIN      
        1 agctgcctga ctggcagaga acagagactg agagccaagg tagagaggcg ttggacccag
       61 gagcagaaca gaactaacaa agaaccccag cagagcaaca gaccccgagg ctagacaccc
      121 aaaagcaccc agacaccagc cagacccttg ggcttcctct caagaaacct gagatctcgg
      181 gaaagagaga agagaggcag aagaaggatg gccgatgccc agatgcaggt agttcataca
      241 ccaaccatcc aaatgaggac tggagaggac ctgccccttc cccctccctc agccctagag
      301 ggtctgccgc caccgccccc caaagaatct ttctccaagt tccagcagca gcggcaagcc
      361 aacgagcttc gccgtctcta caaacacatc caccctgagc ttcggaagaa cctcgaggag
      421 gctgtagccg aggacctggc caaggtactc ggttcggagg agcccaccga gggcgatgtg
      481 caatgtatgc gctggatctt tgagaactgg agtttggatg ccattggcga ccacgagagg
      541 ccagctggca aggagcctgt gtcaggtggc aacgttcagg ccacctctcg gaagtttgag
      601 gaaggctcct ttaccaacag ctcagatctg gagccaggac cccagctgtc agggggtgac
      661 gtccgagcta ccagacagct gtttgagacc aagtcactgg atgcactgac aggccaggaa
      721 gaggcaacac agatgaccat gaaggaacct gcagtctctg gagatgtaca gggaaccaga
      781 aaactctttg agactaagcc cctcgacatg ctgggctcct gcccctctat ccaggaccag
      841 agccctttag agctgcgctc agagattcag gagctgaagg gtgatgtgaa gaagacggtg
      901 aagctgtttc agacggagcc tctatgtgcc atccaggatg cagagggcgc catccatgaa
      961 gtcaaggctg cctgtcggga ggagatccag agcaatgcag tgaggtcagc tcgctggctc
     1021 tttgagaccc gacctctgga cgccttcaac caggacccca gccaggtgag ggtgattcgg
     1081 gggatctccc tcgaggaggg agccctgccc gacgtcagtg caactcgctg gatcttcgag
     1141 acgcagcctc tggatgccat tcgtgagatc ttggtggacg agaaggactt ccagccatct
     1201 ccagatctca tccctcctgg tccagacgtt cagcatcagc gacatctgtt tgagacctgc
     1261 gccctggaca ctctgaaggg agaaagagaa accgaggcag aggctccagc caaggaggag
     1321 gtgattcctg gtgacgtccg ctctacactc tggctgtttg aaacaaaacc cctggatgct
     1381 ttcagagacc aggtccaagt gggtcacctg caacgggtgg atcaccagaa gggtgagggg
     1441 cctgtgatag agtgtctgtc cagtaacggc acttcagcgc tgcctctgtc tcagggtgtc
     1501 ccccagaaca atgggccgaa aggggatgtg aaaaccttca agaatctttt tgagaccctt
     1561 cccttagaca gcattgggca gggtgagcct tcagcctgtg gaaacataaa cagaggacaa
     1621 aggactgatt ctactgggct gtccgagggc gccgatgccc ccgtatatgc tatgcaggac
     1681 agcagaggac agcttcatgc cctgacttct gtcagcagag agcaggtagt tggaggtgat
     1741 gtacaaggct acaagtggat gtttgagaca cagcccctgg accggctggg cagaagcccc
     1801 agtaccgtgg atgtggtgcg aggcatcacc cggcaagaag tggtggctgg ggatgtaggc
     1861 accactcggt ggctctttga gacgcaacca ctggagatga tccaccaaca agagcagcag
     1921 aagcgagagg aggaggaggg gaggggtcca ggaggccccc ctcctgagct cccccagaag
     1981 ggcgatgtac aaaccatccg ctggctattt gagacctacc ctatgagcga gttggcagag
     2041 aagcaggaat ctgaggtcac aggccctgtg agcaaggcag aggcacagtc atgcacctgg
     2101 atgtttgggt cccaatctct gaaccaggca gagggctctg gggagcagca cttgcaaacc
     2161 agccaggtcc aggctggaga cagacagaca gacagccatg tctttgagac tgaatctctg
     2221 tcagcccagg gccagtccag tgggagaaag cctgtaaggt actgcagccg agtggagatt
     2281 ccttccgggc aggtatctcg gcagaaagaa gttttccaag ccctggaagc aggcaagagg
     2341 ggggtacagg agactgtttt aagccccgga tccatcccca caggctccgt gcataaattc
     2401 acctggctct ttgaaaactg ccccatgggc tccctggcag cagagagtgt cagtgggggc
     2461 aacctccagg aagaacagcc caaagtctct gcagaccctg ggaccccaga gaggcaggag
     2521 acagcagccg agagaaccct tcggactttg catgccaccc ctggcatcct gcaccacgga
     2581 gggatcctca tggaagcccg agggccaggg gagctctgcc ttgccaagta tgtgctccca
     2641 agcccagggc aggggcgccc ctgtgtacag aaggaggagc tggtgtgcgg tgagctcccc
     2701 aggatcgtcc gtcaagtgct gggccggaca gatgtggacc agcagggact gctggttcag
     2761 gaggacacag ctggccaact ccgactccac ccactcaaac tgccagggcc tggtgaccct
     2821 gagaatattg aagacatgga cccggagctc cagcagctgc tggcctgtgg cctgggagtc
     2881 tctatggcaa agacggggct ggtgatgcaa gaaacaggac agggcctagt ggcattgact
     2941 gcctactccc tccagcccca gccaaccagc aggggccctg aaagaagcag tgtgcagctg
     3001 ctggccagct gcatagacaa aggagaactg cacagccttc ccagtttgcg gtgggagccg
     3061 ccaacagact caagttcagt accagttact gaggagaccc agaggcttcc cccaactgag
     3121 agcatcatac gcgtcacccc attagactcc accatgaaga tggggcatct gagagtctca
     3181 ggatccacac cctgcccacc tctacctcgg gcagctggaa aagtggtcct tccaaatggg
     3241 agaccgggag caccattgca ggaagcaagg aagcaagtgg atatcagcca tgctgggcag
     3301 aaagggaagg cagcctcagg aagaccagaa ggaaccattg ctcctccttt agggtctggg
     3361 gctccaaatc tccaggaggc catgcaaaat ctgcgtttgg caactgctga ggcccaaagc
     3421 ctgcaccagc aggttctgag caggcatgca cagggctctg accctgcagc cacctccata
     3481 tctgctcaag atgttctgca agtgccgact cctaccacta cccaaggtag catcatgcct
     3541 gtggctggaa gggacgccag gatcacagcg gtccccagaa agctgctgtg acagaagaac
     3601 cagaccaccc agctcaaggc caccaccaga aggactccgt ccagcaggcc tccaagcccc
     3661 tgcgggaacc ccttcttcac agtcacaaca gacctgctgg ccagaaaacc cttgaagggt
     3721 cagag
//
