LOCUS       XM_006257509            6607 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus X-linked inhibitor of apoptosis
            (Xiap), transcript variant X5, mRNA.
ACCESSION   XM_006257509
VERSION     XM_006257509.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006257509.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006257509.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6607
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6607
                     /gene="Xiap"
                     /gene_synonym="Api3; Birc4; riap3"
                     /note="X-linked inhibitor of apoptosis; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 71 ESTs, 3 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 48 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:63879"
                     /db_xref="RGD:620692"
     CDS             274..1764
                     /gene="Xiap"
                     /gene_synonym="Api3; Birc4; riap3"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase XIAP isoform X2"
                     /protein_id="XP_006257571.1"
                     /db_xref="GeneID:63879"
                     /db_xref="RGD:620692"
                     /translation="MTFNSFEGSRTVVPADTNKDEEFVEEFNRLKTFANFPSSSPVSA
                     STLARAGFLYTGEGDTVQCFSCHAAVDRWQYGDSAVGRHRRISPNCRFINGFYFENGA
                     TQSTSPGIQNGQYKSENCVGNRNHFALDRPSETHADYLLRTGQVVDISDTIYPRNPAM
                     CSEEARLKTFQNWPDYAHLSPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAWS
                     EHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTNSPRNPAMAEYDARIVTFGTWLY
                     SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLDEKG
                     QEYINNIHLTHSLGESVVRTAEKTPSVTKKIDDTIFQNPMVQEAIRMGFNFKDIKKTM
                     EEKLQTSGSNYLSLEVLIADLVSAQKDNSQDESSQTSLQKDISTEEQLRRLQEEKLCK
                     ICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCCTVITFKQKIFMS"
ORIGIN      
        1 aggagttaca aaccagtctg cagagcttgt taaggaaaag agagagaatg agaaagcaag
       61 agagggagaa agtcagagcg ctaggaagaa accaaaacag aaaaacagaa agggaaagaa
      121 agaaagaaag aaagaagcca gagggcagga aggtagacgc tgcaagcaga tgccacttgc
      181 ttatcatgaa tgatcttcac agaggcggtc ttctgactga gaacagcacg gtccttggca
      241 gaaaaggtgg acaagtcgta ttttcaagag aagatgactt ttaacagttt tgaaggatct
      301 agaactgttg tacctgcaga caccaataag gatgaagaat ttgtagaaga gtttaataga
      361 ttaaaaacat ttgctaactt cccaagcagc agtcctgttt cagcatcaac attggcgcga
      421 gcggggtttc tctacactgg tgaaggagac accgtgcagt gtttcagttg tcacgcggca
      481 gtagatagat ggcagtatgg agactcagct gttggaagac acaggagaat atccccaaat
      541 tgcagattta tcaatggttt ttattttgaa aacggtgcca cacagtctac atctcctggc
      601 atccaaaatg gccagtacaa atctgaaaac tgtgtgggaa acagaaatca ttttgctctt
      661 gacaggccgt cggagactca tgcagattat ctcctgagaa ctggacaggt tgtagatatt
      721 tcagatacca tatacccgag gaacccggcc atgtgtagtg aagaagccag actgaagacg
      781 tttcagaact ggccagacta tgcccattta agccccagag agttagctag tgctggactc
      841 tactacacgg ggattgatga tcaagtgcaa tgcttttgtt gtggtggaaa actgaaaaat
      901 tgggaaccct gtgaccgtgc ctggtcagag cacaggagac actttcccaa ctgcttcttc
      961 gttttgggcc ggaatgttaa tgttcgaagt gagtctggtg tgagttcaga taggaatttc
     1021 ccaaattcaa caaattctcc aagaaatcca gccatggcag aatatgacgc acggatcgtt
     1081 acttttggaa catggctata ctcagttaac aaggagcagc ttgcaagagc tggattttat
     1141 gctttaggtg aaggtgataa agtgaagtgc tttcactgtg gaggagggct cacggattgg
     1201 aagccaagtg aagacccttg ggaacagcat gctaagtggt atccagggtg taaatatcta
     1261 ttggatgaga agggacaaga atatataaat aatattcatt taacccattc acttggggaa
     1321 tctgtggtaa gaactgctga aaaaacacca tcagtaacta aaaaaatcga tgataccatc
     1381 ttccagaatc ctatggtgca agaagctata cgaatgggat tcaacttcaa ggacatcaag
     1441 aaaacaatgg aagaaaagct ccaaacatct gggagcaact atctatcact tgaggttctg
     1501 attgcagatc ttgtgagtgc tcagaaagat aattcgcagg atgagtcaag tcagacttca
     1561 ttgcagaaag acatcagtac tgaagagcag ctaaggcgcc tacaagagga gaagctttgc
     1621 aaaatctgta tggatagaaa tattgctata gtttttgttc cttgtggaca tctggtcact
     1681 tgtaaacagt gtgcggaagc agttgacaaa tgtcccatgt gctgcacagt cattacgttc
     1741 aagcaaaaaa tttttatgtc ttaatccagc accacagtag gcatgttatg ttcttcttac
     1801 tgcaattgaa tgtgtgatgt gagcgaactt taagtaatca gcatcgcagt ccattagcat
     1861 ctgctcccag atggaaacaa atgttaacag cactgtttca ggctaatctt cgaatttctg
     1921 gatctgaatg cccgatctta gcttattagc tgttttacca tttatccagg gtttgacacg
     1981 ttagaaacct tagacaaaga agcattttat aacttttcac atgtatattt gtagtacact
     2041 gacttgtttt ccgtgtgtaa gtgaatgagt cacctgcatt tttcattcct tttttcataa
     2101 gcttaacaag cggagtgttc tgtataagca gggaggtttg atttaatctg cccaatcatt
     2161 ttaatttgct tattgtaaac agggaaagaa ctgttccaca ctggttggag gatgaacatt
     2221 gtttttagat gtttgtttct gtgttttagg attctgttca tttacttggg atttatttac
     2281 ttgggaattg taaatgtact tatatgaata tttttaagtg attttgccat ctcctaaaag
     2341 atatctaatg gtggactacc atctaactag catgtactga catagaaaag catcacagat
     2401 atactatgta taaaatacag atggcaaaac actatattta tctagttgga gccaaatcat
     2461 cacatgtgta ttttgtacct gtacaggaca aaaagatttg gaaagataag tatcacactc
     2521 ttaaatgtat tttttcttca gggggtgggg gatgggtctt agagggcctt atagagccct
     2581 tcactttttt ccattttttt ctgtttgaag cttttataag tatgtattac ttttataatc
     2641 agaattctta gaaaatattt tgctgattta aaggcttagg catgttcaaa cgtctgcaaa
     2701 actacttatc gctcagtttt agcttttcta atcccggaag gcaggccagt taacttttct
     2761 ggtgccaatg tgaaatttaa atgtttttgt tttacctgct ttgtggatga aaaatatttc
     2821 tgagtggtag ttttctgaca ggtagatcat gtcttcttat cttgtttcaa aataaatatt
     2881 tctgattttg taaaatgaaa tataaaatat gtctcagatc ttccaattaa ttagtaagga
     2941 ttcatcctta atccttgcta gtttaagcct gcctaagtca ctttactaaa agatctttgt
     3001 taacccagta ttttaaccat ctgtctgctt ctgtaggtac ctgtagatgc gtgtttgtat
     3061 acggcttgta gttttagtgt cagctctcca tgttgagatt ctcaatgtta ttttgtgtcc
     3121 taaagtctga tgtagttttt gctgttagga agatgaagat gtatatagta caaatgttca
     3181 gtctatgatt gttttctgtt tgttttcttg actaataatg gtagtggata ctttaaaaag
     3241 attttctcaa gatccttaaa acattggaaa ttgtaacata ctgacaagag tagttgtttg
     3301 aatattttta acaacttgta taagtcaata tgaataaaat ccaaagctaa aatgctttat
     3361 aaaacatggg atttacctta agtaattatc atgatagacc tcttgtaaag actggtctat
     3421 tttactacag acaacagttt gggagtgaaa ctgttacaat ttagactttt cgttgtattt
     3481 tctaagagaa agagtattgt taggttctcc taacctctgt tgactactat gataagtgat
     3541 gttattttaa ttgcaaattt aaatagaaac caacagaatt aagtaactga ctaccctttt
     3601 ttccttcgct tttttttttt ttaataaaaa tccttagttc tgtataatgt cttctgctta
     3661 ggttaagtta tataattgtt aggttgcatt tgatctaaaa tgactaagat ttcaatttat
     3721 atttcaagca ttttaccagg gaataaaagt gttagtttta aaaatcgctt ccaaggcact
     3781 tcaggtccaa ttcatgtagg tagtttgttt tatctagttg ttagccaagg acttaaggac
     3841 tgattgtttt caaataaggc ttttcttgtt ctcagagctt cactcagttc attaaaactc
     3901 ctttaaaacc tgtgtgctga gagttaagca agacctcttt tcttgtcttc atgagttgcg
     3961 aaattgaatt catggagctg atgtggctaa caagtttatt ttaggaattg tttagaaaat
     4021 gctgttgctt tgggttctta aaatcacagc actccaactc taatcaaatt attggagatt
     4081 taccagagtt tgtctgaaat cacgcaagaa aaaaaaaatc actagatcct ttccaatata
     4141 gttgtgtaaa aatggtcact tggaaggtca cattataacc agatctgaat caccacccct
     4201 gagagagttc tcagtgtctg tgtatcaatg ttctttttct gtaaaaagtt cactctcaga
     4261 tttcgaagta accacccatt ttactacata ttagtcatgt gaaatttgaa gttattttgc
     4321 agtaattact tgtatttgtt atttactgtg ttgatcaaac tttttgtgag tatttagcct
     4381 ttgttaaagt attttctttc ttcctagatg ttgcctcttc ctgtagttag gggtagaggc
     4441 gaggtgagtg tagtaagtga atacaatgtg atttcgctgt gctaggctag tttgttgtct
     4501 tgttatttac agtgtgttgt tatctgttct tattttagta agtaagattt atattttgag
     4561 ctctctgaat ggaaactgcc actccaacat gagctgcatg cattgttccc attagaccta
     4621 catcttattg tacttctgag tacctagata ctgaataaaa gaaaaggaga aatgaagtag
     4681 actataattg ctactaatga aacaggaaaa tgggtggaga aatatatgac agataccatt
     4741 ttaatgaaga aaagaactag ccaaataggc ttcacaccct gaattcagat ccccagaacc
     4801 cacacaaaag ctgagtgcat ccaggtggta ctagcacact cctttaaccc cagcatttgg
     4861 gaggcagatc tctcttagtt tgaaaccagc ctgatctgta gagcgagttc caggacaggg
     4921 aaccctgttt cacaaaacaa aacaaagaaa caaaaaaagc taagtgcact aggccaggta
     4981 cctgtattcc caaaatgcct acctgaaaca ggaagtagat aggagaatgt ccagaagctc
     5041 atgctcattg aatggcgtat gtattaacaa agaggtacca tggtaaacaa agtgggaagg
     5101 tgagggccca ccaaaaccca aaggttcatg caccatggca ggtatccact tacactcaca
     5161 cacacacaca cacacacaca cacacacaca cacacacaca cacacaaaag agaaaaaatc
     5221 aaaagtatta acacaaccat cttccaagat gatggaatgc aactcgagaa catcttatat
     5281 actcttaagt gatgactctc atcctaaaac tttagaatcc tccatgggtt tgtcttgatg
     5341 gaggatcttg gactaaagat taaaagagga cctggaaaga taactcaact gttgtgagac
     5401 ttgctgcttt ttcagaggac ctaggttcag ttcccagcac ctacatgatg acatgtaact
     5461 ccagctctgg tgccctcttc tggcctccaa gggcgcatgc atgcatgtat acatacacag
     5521 tcatacacac ctaaaatgaa aataatcttt gaagcttaaa tgaaatttct gttaactttt
     5581 agatactatt atttgtttcg ctggatgctt cttgaaacaa agctataaat tgtaatagtt
     5641 tgatccttta aaaatattta aattactttt tcaaaatcta gaaaaagtat tcttactaaa
     5701 ttcagttgag ttgtcctaat agaaacagtc aacttattcc catcttaatg ttttagtttg
     5761 gctctgaaac acttagcaca atgtagattt cttccttaca taataaagtc acagactatc
     5821 agagctagaa atgaccttaa gagagtcact tattcacacc accaccacca ccttcatttt
     5881 attgttgagg caacacctca aaggagaggt gattggctcc aggttatata gctaattagt
     5941 gatagattcc ttactgggac atagtttgga gttgaaacct tcaactatga gattatgagc
     6001 ctcaccatac cggccgcttg tccttgaagt ctcaggtgtt tttcaactgt tcattctatt
     6061 acactctatt ttcactgcac attaagtggt gctttataat ttctgtagta ggaccattgt
     6121 tcatactttc aaattaaaca gtatgacaat aatgcttgag tgttaaagtt ctcttttgga
     6181 gactgaagtt tgcagatgtg agtgcacatg tttggcattt actatgtgct tatgtattat
     6241 taatggacat ttaagattac tgtttggtca ctgtctatac ttaccaacaa acctgcattt
     6301 ttaatttgat gtaataacgg cataatgtaa tttctgtttt tgcatttttg ttatccttta
     6361 cccaaaagac tgaccaattg ctttgtcata ttgtactata tttgtgaata taattttatg
     6421 actccttttt gttcttttaa tggatacctt ttctttcatt atgaaaactt ttcatcctga
     6481 aaactttcat tatgaaaatt atagagagaa ttgctttctg ctctataatc tgtcatttgt
     6541 tatagattaa agcttatttt tctgtgaata aaacttattc aataaagcac tattctttaa
     6601 aatgtta
//
