LOCUS       NM_001106871            4240 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus X-C motif chemokine receptor 1 (Xcr1), mRNA.
ACCESSION   NM_001106871 XM_001078739 XM_236740
VERSION     NM_001106871.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4240)
  AUTHORS   Bauer,A., Madela,J., Berg,C., Daugvilaite,V., Gurka,S., Mages,H.W.,
            Kroczek,R.A., Rosenkilde,M.M. and Voigt,S.
  TITLE     Rat cytomegalovirus-encoded gamma-chemokine vXCL1 is a highly
            adapted, species-specific agonist for rat XCR1-positive dendritic
            cells
  JOURNAL   J Cell Sci 133 (5) (2019)
   PUBMED   31649144
  REMARK    GeneRIF: Rat cytomegalovirus-encoded gamma-chemokine vXCL1 is a
            highly adapted, species-specific agonist for rat XCR1-positive
            dendritic cells.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4240)
  AUTHORS   Geyer,H., Hartung,E., Mages,H.W., Weise,C., Beluzic,R., Vugrek,O.,
            Jonjic,S., Kroczek,R.A. and Voigt,S.
  TITLE     Cytomegalovirus expresses the chemokine homologue vXCL1 capable of
            attracting XCR1+ CD4- dendritic cells
  JOURNAL   J Virol 88 (1), 292-302 (2014)
   PUBMED   24155383
  REMARK    GeneRIF: biology of vXCL1 offers an interesting opportunity to
            study the role of XCL1 and XCR1(+) DC in the cross-presentation of
            viral antigens
REFERENCE   3  (bases 1 to 4240)
  AUTHORS   Yoshida,T., Izawa,D., Nakayama,T., Nakahara,K., Kakizaki,M.,
            Imai,T., Suzuki,R., Miyasaka,M. and Yoshie,O.
  TITLE     Molecular cloning of mXCR1, the murine SCM-1/lymphotactin receptor
  JOURNAL   FEBS Lett 458 (1), 37-40 (1999)
   PUBMED   10518929
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473954.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001078739.1, XM_236740.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16676786,
                              SAMN16676789 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4240
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..4240
                     /gene="Xcr1"
                     /note="X-C motif chemokine receptor 1"
                     /db_xref="GeneID:301086"
                     /db_xref="RGD:1311480"
     exon            1..92
                     /gene="Xcr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..1093
                     /gene="Xcr1"
                     /note="chemokine (C motif) receptor 1"
                     /codon_start=1
                     /product="chemokine XC receptor 1"
                     /protein_id="NP_001100341.1"
                     /db_xref="GeneID:301086"
                     /db_xref="RGD:1311480"
                     /translation="MDSDSDALSIPASWVQMESSTVFDYDKSNLLCDNNVIFFSIIFT
                     IVLYSLVFLLSLVGNSLVLWVLVKYENLESLTNVFILNLCLSDLMFSCLLPVLISAQW
                     GWFLGDFFCKFINMIFCISLYSSIFFLTIMTIHRYMSVVSPISSLGIYTLRCRMLVTT
                     SVWAASILFSIPDTVFHKVISLKCDFSERHGLLASVYQHNILFLLSMGIILFCYVQIL
                     RTLFRSRSRQRHRTVRLIFTIVVAYFLSWAPYNLVLFLKTEVIQLSCEGRQQLDFAMI
                     ICRNLAFSHCCFNPVLYVFVGVKFRRHLKRLLQQVWLCPKTSNPVPFSYSPGTFTYEG
                     PSFY"
     exon            93..4240
                     /gene="Xcr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgttgcctat atgaagctct agcactagaa ggggagaaca aaggaagcac aaaacataca
       61 gacttgaaaa cgtgacatgg actcagactc agatgctctc agtatacctg cctcctgggt
      121 ccagatggag tcctctacag tctttgatta tgataaatcg aatcttctat gtgacaacaa
      181 tgtcatcttc ttttccatca tcttcaccat tgtcctgtac tctctggtat ttctcctcag
      241 cctggtgggt aacagcctgg ttttgtgggt cttggtgaag tatgagaatc tagagtcact
      301 caccaatgtc ttcatcctca acctgtgtct ctcagacctc atgttctcct gcctactgcc
      361 cgtgttgatc tcagcacaat gggggtggtt tctaggcgac ttcttctgca agttcatcaa
      421 catgatcttc tgcatcagcc tctacagcag catcttcttc cttaccatca tgacaatcca
      481 ccgatacatg tctgtagtga gccccatctc ctctctgggc atctataccc tccgctgccg
      541 catgctggtg accacatctg tgtgggcagc cagtatcctg ttctccatcc ctgatactgt
      601 cttccacaaa gtgatttcct taaaatgtga cttttctgaa cgtcatgggt tgttggcatc
      661 agtctaccag cacaacatcc tcttcctcct ctccatgggg ataatcttgt tctgctatgt
      721 acagattctc aggaccttgt ttcgctcaag gtccagacag agacaccgaa cggtcaggct
      781 catcttcacc atcgtggtag catacttcct cagctgggct ccttacaacc tcgttctctt
      841 cctgaaaact gaagtcatcc agctgagctg tgagggaaga cagcagctgg actttgctat
      901 gatcatctgt cgcaatttgg ccttctccca ctgctgcttc aatccagtgc tttatgtctt
      961 tgttggggtc aagttccgca gacacctaaa acgtctcctc cagcaggtct ggctgtgccc
     1021 aaagacatcc aatcctgttc cattctccta ctcccctggt acctttacat atgagggccc
     1081 ctccttctac tgagaggaga ggatgggaac atggagatga ctaggtgagc tgaaggaaga
     1141 caagaagaag tggatcagga aggaaaatat aacagtggag ataccagcat tgactacaga
     1201 ggtgtggagg aaagacatga tagctctggg aaagtggctt ccagctgggc aattcaaagc
     1261 aacacttcct gatgaagcaa cacttcatca ttcattcttt tactcagaca tagattgctt
     1321 atcagtgatt ggtcaaaaga tcctaaatgg aaggatttct ggacttgaag ttaatagtat
     1381 gtgctaactt tgaagtcagg tttctggcac atagggttgt cacaaactat tttttttcca
     1441 ccttggtgat ggctgactct gtggttctta gcagctactg aagaaaacgg tctcttcatg
     1501 acaagaataa tcacatcttc aaataagtac agtcacaatg aagtctagac cataaaatcc
     1561 cactaaaatg aagatagtac tgtattctgg caacagctgc taacacataa actggctttt
     1621 aaacatttat ctcataactg aaggaatgga tgcaaaatgt gttactgtct acactaagta
     1681 attatttgga caatacaaag aagaataaga tattgttgct aacttccagt tgacaccaat
     1741 ccatccaaga agatccagat aaaaaagtct acttaacaga ggcattcaag ttgaatattt
     1801 ctctgtcatt tcatctcttc caaattgaga aagatgattt cctccatctg gataatagta
     1861 ccagcttccc ccttttaacc aagtactgca ttccctttcc ctaagttcac agagccaggt
     1921 tctgtggatt ctgcgtttcc aggatctctc cagcttattc tcacgatcac ataccggtga
     1981 ctccacctct actatgctct ctattccata gtgtcttcct tttgcttctt tttttcctct
     2041 gttccttctc caggaagctg cacgcctgag atttttcttt tatttacagc ttctctgtct
     2101 ggagtttttc tttaaagctt taataaaatt gtcctcaagc ttccttctga gttacttctt
     2161 aaattctttt attaatgaaa ctaataaccc aaaaagagga cccagatttc cctggtaata
     2221 taaggtgact ccatcaggat gctccagaat ttcaggtaac attattacct ttgggaagtt
     2281 tagactgtta tgtctgcatc cagggccaga gacagaactc aaatcctgtt ctttcaacca
     2341 aaaataaata aaaacatata acagtagagt ttgaagaatt aatgaaaaag ttaaaagcca
     2401 taaaacagct atggtttacc cagaagaagt aactttcaag tggatagaga gatggctcag
     2461 cagttaagag cactgctatt cctccagagg gcctaagttc agttccctaa gcccacatgg
     2521 tagctcacaa ccatttttaa ctccagttcc aggggaatcc attgccctct tctggcctcc
     2581 tttcctttgt aaacaaagat gaacatttca tatatctgac aatgtgttgg ttagaaatgc
     2641 ctcaggaacc ttctacttca tcctacttta tatcctgtcc attagccagg tgaacttgga
     2701 attcctttat gtctccaaga ctcaatctca tctttgaaga gcagaaatct ctatagcaca
     2761 gagctgtgtt gagttttaaa catgatgctc tataggtttt tggttttggt tagggtgtga
     2821 catactaggt tttaaatata tacaaccatc tactgcacaa tattttggtc aaagttggat
     2881 cacatatgac tgtggtccct taagactaaa tcatctagtg atgtcatagt catcttaatt
     2941 tgtctaacta taccccagat gaattgtcta tgaaattctc aaaaatgcat cattaccctt
     3001 aaataactca tgattgttgg aggtccgtct tcctcttttc tgtaaactta tttggggtct
     3061 aggtttcaac aagggtattt gaaatctttc ttataggaac aggactgagg atgagggttc
     3121 agagacaaga gtcatgtgac taatcttggt aaatcagact ctggagacca gcatcagggt
     3181 gtagatctgg gtttattgcc cagcacatta gcttatagag agtgtttgag caatcccaag
     3241 cctctaaatc tttggtcagt catagctcac cacatctcag ctccaataaa agctgagatt
     3301 gaggaggtaa ctcagagagg ggttggggaa gcatcatcac ctattgggac gtccgtgaac
     3361 actcagaaac aaccgcactg tcctggcctt agttcctttt tgctttctca ctggtgttct
     3421 ggagccatct tagatctaat gctatgtacg gtagatgagg actcttcaag ttgtcacagg
     3481 agcctgtggc gctgtgtgct ctccatcccg cattttttct tcacaaggtt gtcttccaca
     3541 tcccccacac tctcatcctt aaacacccca aagctgttca gactgtggta agagcaagtt
     3601 tttcttagtt cactatattg ataaatcttc atttctgatg tcacttcctc ccacttctcc
     3661 ccttttttgt tttcctttgt taacagaaaa gggaatcatt tctgttcacg aggttccttt
     3721 ttatccccat ctacaaactg ccaactccat caagttaatg ttgtctcata tacctctagt
     3781 ataaaaaatg aaattaacta aaaagattta tttttccttc ctgtatgaat atatcctgaa
     3841 aacctggaat gctgaagtct ggcagatgcc actattttgc aaaagtacac aggcatttct
     3901 agctaaaatg gcaaaaagta aggcagagtg agaggccagc cagagctaag gagcagaacc
     3961 taatcacggg ctgacattcc tacgtactgt cccatttctt tagcatgttc atcgatactg
     4021 gagtcggaat gcagtgttct ctttcatcta gctttagggt gctttgcaac tcagcaacaa
     4081 ggaaacacag ggctgaggaa gctaaacatg ataagtagtt cattagcaca tattttcaaa
     4141 cactgatttt taattctttg ttaaggaggg gaatcaaaaa ctgagaactt aggtccagca
     4201 atacacactt aagttcagtt ttttagttag ataaataaaa
//
