LOCUS       XM_039086894            1402 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WT1 associated protein (Wtap),
            transcript variant X5, mRNA.
ACCESSION   XM_039086894
VERSION     XM_039086894.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039086894.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1402
                     /gene="Wtap"
                     /gene_synonym="RGD1563824"
                     /note="WT1 associated protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 179 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:499020"
                     /db_xref="RGD:1563824"
     CDS             141..653
                     /gene="Wtap"
                     /gene_synonym="RGD1563824"
                     /codon_start=1
                     /product="pre-mRNA-splicing regulator WTAP isoform X3"
                     /protein_id="XP_038942822.1"
                     /db_xref="GeneID:499020"
                     /db_xref="RGD:1563824"
                     /translation="MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKY
                     TDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQ
                     PSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDRGLMPSDYSE
                     EEATSEKFPF"
ORIGIN      
        1 ttttgtggct gcgagacccg caaataaagg ctatctccgg ggctgcggcg ggaggagtgc
       61 gggggggggc cggcggcggc gcggcctcgg cctgtgtgac tggcggcgcc cgcgcagcct
      121 cgggctggga agggtacaag atgaccaacg aagaacctct tcctaaaaag gtccgactga
      181 gtgaaacaga cttcaaagtt atggcacggg atgagttaat tctgagatgg aaacaatatg
      241 aagcatatgt tcaagctttg gagggaaagt acacagacct taattcaaac gatgtgactg
      301 gcttaaggga atctgaagaa aaactaaagc agcaacagca ggaatctgca cgcagggaga
      361 acatccttgt catgcggcta gcaaccaagg aacaggagat gcaagagtgc accactcaaa
      421 tccagtacct caagcaagtt cagcagccga gtgtagccca actgagatca acaatggtag
      481 acccagcgat caacttgttt ttcctaaaaa tgaaaggtga actggaacag actaaagaca
      541 aactggaaca agcccaaaat gaactgagtg cctggaagtt tacgcctgat agaggcctga
      601 tgccgtcgga ctattccgaa gaagaggcca cctccgaaaa attccccttc taggacatgt
      661 agacacttga aatgtttctg tttgaagaaa atagagggaa aaacagaagt cttaagtctg
      721 tggcacactg tgtcttcaga cagtttggag gattgaaaac ctagaggttt taaatcatga
      781 attgaacatg taaaattcca gtaaaatgta aaaatggaat atgcatcgct cttaaccatg
      841 agcatagtga cttagagaca ctgtacatca gttatgccaa taagactgtg gacttcatga
      901 ttgttgaact actgggtcaa aactcaaatg aggtgaattt tgcctttaaa ggatttactt
      961 gctaagaacc aactctaata gccgtgagac tatcacgtca tagctaccag tacaagtagt
     1021 gcatatattt atccatttag ctttgagctc tatattacat aatggagcct taaatctatg
     1081 tggtttttat caatggtttg ttttttgaat ggttgtggaa actgtagata accttaaccg
     1141 aggactgtac aaacgtgaag gtgtggtctc acacttcagg tttaaactgt ttgacgcatt
     1201 ataagcattc atttcacaac tagattgtat atggtatttg gctgtgatga gattcccatt
     1261 attcagtaaa ccctcatctc attcagcagg cacatgttaa acagcattgt cgttggtgtt
     1321 aaatggggga atgtgttcct tcattgtatt tggggccttt tgtatcgaat tcttgatatt
     1381 aaattaaatg tgccttgaaa ta
//
