LOCUS       NM_001024234            2634 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus WSC domain containing 1 (Wscd1), mRNA.
ACCESSION   NM_001024234 XM_220627
VERSION     NM_001024234.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 29, 2021 this sequence version replaced NM_001024234.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094520.1, SRR22399481.2717583.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-685               JAXUCZ010000010.1  56894556-56895240
            686-800             JAXUCZ010000010.1  56900616-56900730
            801-985             JAXUCZ010000010.1  56902487-56902671
            986-1107            JAXUCZ010000010.1  56905629-56905750
            1108-1267           JAXUCZ010000010.1  56917017-56917176
            1268-1432           JAXUCZ010000010.1  56917978-56918142
            1433-1633           JAXUCZ010000010.1  56920813-56921013
            1634-2634           JAXUCZ010000010.1  56922223-56923223
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..2634
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /note="WSC domain containing 1"
                     /db_xref="GeneID:287466"
                     /db_xref="RGD:1308212"
     exon            1..685
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..1986
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /note="WSC domain-containing protein 1"
                     /codon_start=1
                     /product="sialate:O-sulfotransferase 1"
                     /protein_id="NP_001019405.1"
                     /db_xref="GeneID:287466"
                     /db_xref="RGD:1308212"
                     /translation="MAKPFFRLQKFLRRTQFLLLFLTAAYLMTGSLLLLQRARVALPQ
                     ALRAPGSLQALPVATVALGVGLLDSRSLHDPHSSPDLLLDVDTLRSPLARVPPGIRWP
                     RRNRSSLRRRWLHHLTSDPQGPPTLGPEASGPASHNQGNYLGCFSEEGQERTLKGAVF
                     YDLRKMTVSHCQEACAERSYVYAGLEAGAECYCGNRLPATRVSLKECNQECKGEKGSM
                     CGALHRLSVYSVGLQQSGAKKRWTATYRGCFPLPENITRTFSSSMTQANVTVETCSGF
                     CSQKEFPLAILRGWACYCAYPTPQFSLRDAVDGALCSQGTEAQGLPGYCEVYQTPVQD
                     TRCTDRKFLPNKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKG
                     EKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAPDR
                     NWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRHSLVPTLREMVAFLNVS
                     VSEERLLCVENNKEGSFRRRGRHPHDQEPFTPEMKDLINGYIRTVDQALRDHNWAGLP
                     REYVPR"
     exon            686..800
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     exon            801..985
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1107
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1267
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1432
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     exon            1433..1633
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
     exon            1634..2634
                     /gene="Wscd1"
                     /gene_synonym="RGD1308212"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggttcctgag actgacgagg gcaaggagag ctaagggatg ggggaaatgg tggcccctgg
       61 gcagaagcta ccaacaaggg gcttgcggct gccagaaaga agtgatggtg acatttgaaa
      121 cccacaggga cagaagccca ccagtgtgct gacaggtgtc aagagccagg atgctgggat
      181 gatgcccttg gaggccctgg tgtcccccct gcccaggtgc taggagccgt ccccaggctc
      241 caactgggag ccctgctgcc caggggcatg gccaaacctt tcttcagact ccagaagttt
      301 ctccgcagaa cacagttcct gcttctcttc ctcacggccg cctacctgat gaccggcagc
      361 ctgctgctcc tgcagcgggc cagagtggcc ctcccacagg ccctccgggc tcccggcagc
      421 ctgcaggcct taccagtggc cactgtggca ctgggtgtgg gtctgctgga cagcaggagc
      481 cttcatgacc cccatagtag ccctgaccta ctacttgatg tggacacact aaggagtcct
      541 ctggcccgag tgccacctgg aatccgctgg ccccggagaa accgcagctc actgcggcgg
      601 cgctggctcc accacctgac cagtgacccg caggggccac ccaccctggg cccagaggcc
      661 tctggaccag ccagccataa ccaaggcaat tacctgggat gcttcagtga ggagggccag
      721 gagagaaccc tgaagggggc agtgttttac gacttgagaa agatgactgt gtcccactgc
      781 caggaagctt gtgctgagag gtcctatgtc tatgctggct tggaggctgg agcagagtgc
      841 tactgtggga acaggctgcc ggccacacgt gtcagcctga aggagtgcaa ccaggagtgc
      901 aagggggaga aaggctccat gtgtggggct ctccaccgac tctccgtgta tagtgtgggg
      961 ctgcagcagt caggagccaa gaagcggtgg actgccacct accgagggtg cttcccgctg
     1021 cctgagaata tcacccgcac cttctcctcc tccatgacac aggccaacgt gactgtggag
     1081 acgtgttctg gattctgttc ccagaaagag tttcctctag ccatcctccg gggctgggct
     1141 tgctactgtg cctaccctac cccccaattc agcctgcggg acgctgtgga tggagcactg
     1201 tgcagccaag gcacggaggc acaagggcta cctggctact gtgaggtcta ccagacacct
     1261 gtgcaagaca cccggtgtac agacaggaag ttcctgccca acaagtctaa ggtgtttgtg
     1321 gctctgtcaa gcttcccggg agctgggaac acatgggcaa ggcacctgat cgaacatgcc
     1381 actggcttct acacaggaag ctactacttc gatggaaccc tgtacaacaa agggttcaag
     1441 ggtgagaagg accactggcg gagccggcgc accatctgcg tgaagacgca cgagagtggc
     1501 cggagggaga ttgagatgtt tgactcagcc atcctgctga tccggaaccc ttaccggtcc
     1561 ctagttgctg aattcaacag gaaatgcgct ggacacctgg gctacgcccc tgaccgcaac
     1621 tggaagagca aagaatggcc ggactttgtg aatagctatg cctcctggtg gtcctcacac
     1681 gtcctagact ggctcaagta tgggaagcgg ctgctggtcg tgcactatga ggagctgcgg
     1741 cacagcctgg tgcccacgct tcgggagatg gtagccttcc tcaatgtgtc cgtgagcgag
     1801 gagcggcttc tctgtgtgga gaacaacaaa gagggcagct tcaggaggcg tggccggcac
     1861 cctcacgacc aggagccctt cacccctgaa atgaaggact tgatcaatgg ctatatcagg
     1921 acagtggacc aggccttgcg tgaccacaac tgggctggac tgcccaggga gtatgtgccc
     1981 agatgatagg cccatcctgg tttcctgctc ctgctgagat gcggttacac ttatgggctg
     2041 gacactgctc tagtgcattg atctgtggag acccctggga tgcgtggggg ctgacacata
     2101 gtcagcagcg tgttcttgca gggactgctt tgtgtgcggg ggatcctgag cagaacgagg
     2161 ctgacccaga gagatgcgca tcataggaca ctccttgccg gacacttacg catcctcaga
     2221 cacacgtaga catcacccca ttctcacagt gaccatttta atgtgcctaa gccacttgag
     2281 tggggtgggt cagacactcc cagctttgca cacacagcca gaaatggaca gacacacata
     2341 cacatgtgcc agggtgtata cctgcaaaga ctggctatct gctttcacac atacacatgt
     2401 gcatacactc aaggctgcag gaggccctgg gtttcctggg ttcatttggg cacagactgg
     2461 cttttggggg cccttggctc tggaatactg tactggggag gcaccgttga tatgtgtagt
     2521 actctgggga ctgaaggtgc acagacagac tgttgctgat gggtaccata tgaccctggc
     2581 tgcttgtctg acatcccata aatgtgtgtg ctgtgacatc ctgggcactg caaa
//
