LOCUS       XM_039094813            5927 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Wnt family member 5A (Wnt5a),
            transcript variant X3, mRNA.
ACCESSION   XM_039094813
VERSION     XM_039094813.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5927
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5927
                     /gene="Wnt5a"
                     /note="Wnt family member 5A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 22 ESTs, 16 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     20 samples with support for all annotated introns"
                     /db_xref="GeneID:64566"
                     /db_xref="RGD:69250"
     CDS             417..1499
                     /gene="Wnt5a"
                     /codon_start=1
                     /product="protein Wnt-5a isoform X3"
                     /protein_id="XP_038950741.1"
                     /db_xref="GeneID:64566"
                     /db_xref="RGD:69250"
                     /translation="MSSKFFLMALATFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIG
                     AQPLCSQLAGLSQGQKKLCHLYQDHMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTS
                     VFGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLPRDWLWG
                     GCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVAC
                     KCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTT
                     QDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTER
                     CHCKFHWCCYVKCKKCTEIVDQFVCK"
ORIGIN      
        1 gtggaaaaat caccagtggg agcagactgg gaactctcta ctcccgaata tcttcaggga
       61 agaaacttcg cccggttccc tgcgccccgg atgccagggg cagtgctgat gcttgggagc
      121 tggctccgct tggggatctg tcgcctcggc ctgtttgcaa ccttttggaa ctgaatgaac
      181 tgagcctgac ttgggccagg agggctagac tggaggcagg gtggcagtgt acttcaagac
      241 acaggcccgc agtggtgcga tgaaaacatg gggacaacac caagagaaac aacaggctct
      301 ccgtggtttt cgccccgccc cccagccgct gctggacgtg ggggccagag ggagagtaaa
      361 aaaagcccat tggaatatta agcccaggag tggctttggg gaccgctgga ggtgccatgt
      421 cttccaagtt cttcctaatg gctttggcca catttttctc cttcgcccag gttgtaatag
      481 aagctaattc ttggtggtcc ctaggtatga ataaccctgt tcagatgtca gaagtataca
      541 tcataggagc acagcctctc tgcagccaac tggcgggact ttctcaagga cagaagaaac
      601 tctgccactt gtatcaggac cacatgcagt acattggaga aggcgcgaag acgggcatca
      661 aagagtgcca gtaccagttc cggcatcgga gatggaactg cagcacagtg gacaacactt
      721 ctgtctttgg cagggtgatg caaataggca gccgagagac agccttcacg tacgcggtga
      781 gcgctgctgg agtggtaaat gccatgagcc gagcatgtcg ggaaggcgag ctgtctacct
      841 gtggttgcag ccgcgcagca cgccccaagg acttacctcg ggactggctg tggggcggtt
      901 gcggggacaa catcgactat ggctaccgct tcgccaagga attcgtggac gcacgagaaa
      961 gggaacgaat ccacgccaag ggctcctatg agagcgcacg catcctcatg aacttgcaca
     1021 acaatgaagc aggtcgcagg acagtataca acctggcaga tgtagcctgt aagtgccatg
     1081 gagtgtctgg ctcctgtagc ctcaagacat gctggctgca gctggcggac ttccgcaagg
     1141 tgggcgatgc cctcaaggag aagtatgaca gcgcagcggc catgaggttg aacagccggg
     1201 gcaagctggt acaggtcaac agccgcttca actccccaac cacgcaggac ctggtctaca
     1261 tcgacccaag tccggactac tgtgtgcgca acgagagcac tggctcactg ggcacgcagg
     1321 gacgcctgtg caacaagacc tcagagggga tggacggctg cgagctcatg tgctgtgggc
     1381 gtggctatga ccagtttaag acggtgcaga ccgaacgctg ccattgcaag tttcactggt
     1441 gctgctatgt caagtgtaaa aagtgcacgg agattgtgga tcagttcgtg tgcaaatagt
     1501 ggtgtgcccg cccatcatcc agtcccactc ccaggaccca catatttata gaaagtacag
     1561 tgcttctggt tctttttatt tctcccccaa gaattgcagc tggaaccatg tttttttttt
     1621 ttcttccttc tgttaccatc taagaactct gtggtttatt attaatatta taattaatgt
     1681 ttggcaatag tgggggaaac taagaaaaat atttattttg aggatctttg caaagttagt
     1741 acgaaacttc tttcttctga tgctacagga taaaggggaa ataacacgta ttcgaactta
     1801 gctgtgcagt tggggttcac atctagaagg cataagaact attttcttct caaacagagt
     1861 cctatgagat gggtggtatc ctggtgaaag aggtggtaca gacccatgag tgactcagtc
     1921 ccagtgacca aatgaattgc aggtgctctg gtataagaca aatcacctta aatatagata
     1981 tattaaatat acatatatgc caaaatacag aatacgagac actctgtgtt tttttctatt
     2041 tttagaacga tcttttagaa ggtacaagct agactttcac atcctcataa gcaggcatgt
     2101 caggtatgtt gctatagccc atctacagat actctgttta tggatgtgcc tttttctaac
     2161 agtccttgaa atttggggag ctggtgggct gggggaggga agtccccaga aattagaaag
     2221 cttgaaattt tctacactga ggccataacc ttatggccga ctgattctga ataccagact
     2281 ttatgtccat gaagggattt tggctaaaaa aataataatc ttgttttgaa agccgtctta
     2341 ttttcttaaa aatgaaaacg tacccaggag tcccatttgc aaacccccta cacaggcagc
     2401 aagaaaatcc caggtagttg aagggcagac cgcctctgtg aggagttggt ggcagccatc
     2461 ttcttacacg acccaaagcc ctctctggac tctgctggcc atacttccaa atggccactc
     2521 tggtggatgc tcattgccag cagggcagaa attgtatagg aggagcaatg ctcaaaacca
     2581 gctacttagg gattgttctc tatggctttt ctttggaggg acggtgactt gatgtgtttt
     2641 gccgatatca cttggcccaa ggagtccaca gaagtgcttc cggctgtttg gttgttatac
     2701 tcctgtgttt agactttcct tttgtgtttt tcctattatc ctgcaggtgt accctaaaac
     2761 tgttcctagt gtacttgaac agttgcattt ataatggggg ggatatggtt taatggtgcc
     2821 tgatatctca gtttttttgt atataacata tatataaata tacatatata aatatagata
     2881 taattatatc tcagtgcaat ctgggattta gatttacagt ttgctctggg ctagctttct
     2941 gcctggagtg ttgtgctcca ttgcagtcca gttgggattt ctctttttct aaagcttttg
     3001 agtcttgata ttggcctgtc tgtgactcta ccatgaatac caggaagcaa gctaagactt
     3061 tgaagaagcg ctcagggctc acgtcctgaa tgtatgttgg ttagaaagtg gactttctac
     3121 ttcctgccca ctgccagcca gttctccacc ctctctttgg tgttcttcgt ggggaggaca
     3181 ctgtggtttg tcacagccct agactttgaa aggctcccag aacccaggag taccagcctg
     3241 ctctctattt gctcaactcc tttcccaggg aggacatgtg actgtcctgt ctgacaggat
     3301 ggatctgggt tccccacgca aaccagttca ccacatagat agctagtcta aacagtgttt
     3361 taaaataagg gcacctctgt ttcaaaaatg acatctgctg tgttgttttc aaggcctgat
     3421 actctttttt tccaaggttt gaaaagatgt atgtatccgt tcatgggctt ggtagccttc
     3481 tggtcacctc agtcctgtgg ctcttaactt attgccccaa aatattaatt ccccctcagc
     3541 tacagtaaat tgcaagcaaa agatcttgaa ataaaaaaaa agcactaatt tagtttaaaa
     3601 tgtcactttt tggtttttat tctacaaaag ccatgaagtt cattctctct ctctctctct
     3661 ctctctctct ctctctctct ctctttctct ttctctctct cttatttgtt aaatcagatt
     3721 atgttcattt ttttactgat tcatgtttat gagcagagtg gagtttaaca atcctagctt
     3781 taaaaaaatc tatttaatgt aagatattct acgcttcatt cagatatttt gtatatcccc
     3841 tatggccttt attctgtact tttaatgtac atatttctgt cttgtgtgat ttgtatattt
     3901 cactggttta aaaaaaaaat cgaaaggctt ccgcccatgg aagatagaat ataaaataaa
     3961 atgttccttg tatatgggta agaggtttca gttgtccttc agcaattcat gtagagaaat
     4021 agttttagtt gaagccacaa gagacagcta gggcagctat gtgttcgaaa aacagaagag
     4081 cggatttttt ttttctttct tacccaaacc ggactgttag gaaacctcaa tagagctcta
     4141 tatgtgttgg aacaaaagtg gaattctctt ctcctataga tgttccttca gagcgagaga
     4201 aagcagtaag tcaagcagat ggcgaaaagc tggccacagg attactcaca ttcttttgac
     4261 attatgcatg cgacttaatt gttttagagt gtgtttctat tgtagcatcc cagagatgaa
     4321 ccgaaaaggc tcatgctctc atccatgagc agctcttcgg cttatacata tacatgcata
     4381 gacatgtgtg tgagatgcat gtgtgcacac atgtctgtat gtatccttgg tttgccacta
     4441 ctactgttgt gcctctctat tcgggttgac caggagtctt gtggagcatc tccgcatcta
     4501 atttgaaggc agtctttatg ggaagaaagc aagggtcggc agaggacagg aactaaagat
     4561 tccttgtgtg ccctgctttc tggaaatgta gaccagaatc tggccaggac tgtagattga
     4621 tacattagct ggccctttgc ctgcacgctc cccacttccc cccttttctt tctggataac
     4681 cttgtaacat attgaaacct ttaaaggaaa ccaagaatgc attattacac acacacacac
     4741 acacacacac acacacacac acacacacac acacacactc tcacacacaa atagggtaga
     4801 ccaacatata gagtgtttaa aatagcattt ctgggcaaat tcaaactctt gtggctccgg
     4861 gacacacatc tgtttccgtt tttcttcagt tgtatattga ccagtgttct ttattgctaa
     4921 aacatatact cggtgtagca atgtcagcat cttttttctt cccatcctgg agagcattca
     4981 agaccttccc agtacaggaa catcaatgaa gcatttatac acaggcagtg gcatgcagaa
     5041 ccacatccaa aacggtcagt gttggcctcc agggcaaggc tatcctgctc cagtcctgtt
     5101 tctttgtgct cttgaccttc ccgggctgcc acttcctagg tcaacagctg cctgccccca
     5161 ctctcccacc ccagcctcca aggatttccc caacagccag ttccaacgtg tctttttctg
     5221 caaccttatt caagccactg gaaccttcag atcgagccca agagcaggat gacacaacat
     5281 gtggacaaga gctgtattaa cttgatcact agtattaact agtattaagt agtattaacg
     5341 tggtcaccag tgaaaggcac ttgcaacaac tgttcagtct gaaatatagg tagagagtgg
     5401 ggatggcaaa gttgcttgta acttctggta catgtttaat gcacacaggc atggaggcac
     5461 agctctaagg cactgcactg ttactgtaaa gcatacttta aaaatattta ttgtcttaaa
     5521 gagcattttc taatcttccc tctctcggtg gagcggtgaa caagatgcca tgtcatgaag
     5581 gtttaagatg attttatttt ttattgcaga aacatttaga gacctaagaa tttaaactta
     5641 taaaagggat cttctaagtt gcctgttaat gtggaattta cacttaaatc tgatgattgg
     5701 atgatgtttt acgttaggga aataccttgt tatcaaactt cataaagcag atgtaattaa
     5761 aggttcaatg tgagccaatc tagaaggttg catagtgtgt gcaaagaaag gagagacatc
     5821 ttagaccaat ttttatacag ttttcatttt gctgagctag aaaggagata aagattattt
     5881 atttttgttc gtatcttgta cttttctatt aaaatcattt tatggaa
//
