LOCUS       XM_039109881            2631 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus whirlin (Whrn), transcript variant X9,
            mRNA.
ACCESSION   XM_039109881
VERSION     XM_039109881.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109881.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2631
                     /gene="Whrn"
                     /gene_synonym="Cip98; Dfnb31"
                     /note="whirlin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 102 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313255"
                     /db_xref="RGD:631330"
     CDS             819..2447
                     /gene="Whrn"
                     /gene_synonym="Cip98; Dfnb31"
                     /codon_start=1
                     /product="whirlin isoform X8"
                     /protein_id="XP_038965809.1"
                     /db_xref="GeneID:313255"
                     /db_xref="RGD:631330"
                     /translation="MNAQLDGLSVSSSSTGSLGSAAAAAGGGGGAGLRLLSANVRQLH
                     QALTALLSEPEREQFTHCLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRS
                     DQLLFDQYTAEGLYLPATTPYRQPAWAAPDGAGPGEVRLVSLRRAKAHEGLGFSIRGG
                     SEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS
                     VYSAGRIPGGYVTNHIYTWVDPQGRSTSPPSSLPHGSTLRQHEDDRRSALHLLQSGDE
                     KKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAESSGLKVGDQILEVNGRSFL
                     SILHDEAVKLLKSSRHLILTVKDVGRLPHARTTVDQTKWIASSRIGESITNSAGFPGD
                     LTEEGTNKPGFYKGPAGSQVTLSSLGNQTRALLDDQARHLLTEQERATMMYYLDQYRG
                     GTISVEALVMALFELLNTHAKFSLLSEVRGIISPQDLDRFDHLVLRREIESMKARQPP
                     GPGVGDTYSMVSYSDTGSSTGSHGTSTTVSSARV"
ORIGIN      
        1 ggccaagtcc cggctggcga cggcggcggc gtcggaactc gctggaagac tcggcccaga
       61 gcctctcaac agttcgcaaa gtcccagctc ccggccgcgt ggctccgtgt gcgcccgggc
      121 ggcgttgggg cgcggggggc ccgggctgct gcatggtggg cggcccggga catgccccgc
      181 accccccgcc ggacgcccgc ttggctcctc tggctgcgac tgctccggac tctgagacta
      241 gattgaccgg cgccctaact tccttctgac tttggggtcc cccagcccta gaggaacggg
      301 cagctcggct gggggagccc cggacatggt gtgacggggc gggcggcgtg gctgcgcccc
      361 ccactgcggc cacgcgcggt ccccgcgcct tccggcatgt agctgctgtt cccgctcccc
      421 ccggcctcca gccgcagtct ccacgacctc cggcctccag gcaccaactc tttgtccccc
      481 aggatcctgc cgcggtcctc aggattgcag ccgccgtctc ttcgtcctcc gaattccagt
      541 ttcacctgcc ttcgcgcccc tgggacacca gccgcggtcc ctgccacctc cccaggatct
      601 agccaccgct ccagctcacc cgtacctccc caacccaccc cgcagccgtc gtctccaggc
      661 cagtctagac tgcagccgcc gtctccgcgt ctaccccaaa cccagactcc agccgtgacc
      721 tccgcgcccc ggggaatcca gctgtcgcgc cgctggccgc aggtgcagca gccgccccgc
      781 gccgcgcgcc ccgagtgcgg ccgggcctcg gcggggagat gaacgcacag ctggacggcc
      841 tgtcggtgag ctcgtcctcc accggctcgc tgggctcggc ggcggcggcg gcgggcggcg
      901 gcgggggcgc ggggctgcgg ctgctgtctg ccaacgtgcg ccagctgcac caggcgctca
      961 cggcgctgct gagcgagccc gagcgggagc agttcactca ctgcctcaac gcgtaccacg
     1021 cgcgccgcaa cgtcttcgac ctggtgcgca ccctgcgcgt cctgctggac agcccggtca
     1081 agcggcgtct gctgcccatg ctgcgtctgg tcatcccgcg ctccgaccag ctgctcttcg
     1141 accagtacac ggccgagggc ctctacctgc ccgccaccac cccctatagg cagcccgcct
     1201 gggccgctcc cgacggcgcg gggcccgggg aggtgcggct cgtgagcctg cgacgcgcca
     1261 aggcccacga gggcttgggc ttcagcatcc gcgggggctc ggagcacggc gtgggcatct
     1321 acgtgtctct agtggagcca ggctccctgg cagagaagga agggttacgg gtcggggacc
     1381 agattctgcg cgtcaacgat aaatctctag cccgggtgac ccacgcggag gctgtcaagg
     1441 ctctcaaggg ctccaagaag ttggtgctgt ctgtatactc agctgggcgt atacccgggg
     1501 gctatgtcac caaccacatc tacacctggg tggaccccca gggtcgaagc acatcccctc
     1561 cctccagcct tccccatggc agcaccctga gacagcatga agatgatcga aggagtgccc
     1621 tacacctcct gcagagtgga gatgagaaaa aggtgaacct ggtgctgggg gacggccggt
     1681 ccttgggcct cacaatccga ggtggagccg agtacggcct tggcatttac atcactggtg
     1741 tggacccggg ctctgaagcc gaaagcagcg gcctcaaggt tggggaccag attctggagg
     1801 tgaacgggcg gagctttctc agcatcctgc atgacgaggc agtgaagctg ctcaagtcat
     1861 cccggcacct catcctgacc gtgaaggacg tcgggaggct gccccacgca cgtaccaccg
     1921 tggaccagac caagtggatc gccagttccc ggatcgggga aagcatcacc aactcagcag
     1981 ggtttccagg ggacctcaca gaagaaggga caaacaagcc aggattttac aagggcccag
     2041 ccggctccca agtgaccctg agcagcctgg ggaatcagac acgtgcactg ctggatgacc
     2101 aagcccggca cctgctgaca gagcaggagc gtgccaccat gatgtactac ctagaccagt
     2161 accgtggtgg caccatctct gtggaggccc tggtcatggc gctgtttgag ttgctcaaca
     2221 cacatgccaa gttctcactc ctgtctgagg tgagaggcat catctcaccc caagacctgg
     2281 accgcttcga ccacctggtg ctgaggcgcg agatcgagtc catgaaggcg cggcagcccc
     2341 caggccctgg tgtcggagac acctattcca tggtatccta cagtgacacc ggctcatcca
     2401 caggcagcca tggcacctct acaaccgtca gctcagccag ggtgtgacct tggacaaact
     2461 gctcccttcc agcctgcttt tccatctatg gatggaaatg ctggcaccaa gcctgcccca
     2521 agttgctgac ctatggagac cccccagccc caaggataaa gttggcttct cagagcaaca
     2581 aggccttcct tccggcttcc cctgaggacc cagctgttcc cctcaatagg t
//
