LOCUS       NM_001014179            1946 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus WD repeat, sterile alpha motif and U-box domain
            containing 1 (Wdsub1), mRNA.
ACCESSION   NM_001014179 XM_342437
VERSION     NM_001014179.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC089856.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342437.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089856.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q21"
     gene            1..1946
                     /gene="Wdsub1"
                     /note="WD repeat, sterile alpha motif and U-box domain
                     containing 1"
                     /db_xref="GeneID:362137"
                     /db_xref="RGD:1359296"
     exon            1..181
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            182..602
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..1635
                     /gene="Wdsub1"
                     /note="WD repeat, SAM and U-box domain containing 1"
                     /codon_start=1
                     /product="WD repeat, SAM and U-box domain-containing
                     protein 1"
                     /protein_id="NP_001014201.1"
                     /db_xref="GeneID:362137"
                     /db_xref="RGD:1359296"
                     /translation="MVKLIHTLADHGDDVSCCAFSSTLLATCSLDKTIRLYSLSDFAE
                     LPHSPLKFHTYAVHCCSFSPSGHVLASCSTDGTTVLWSAHSGHTLTVLEQPGGSPVRV
                     CCFSPDSTYLASGAADGSVVLWNAHSYKLYRCGSVKDSSLVACAFSPDGGLLVTGSSG
                     GDLTVWDDRMRCLHSEKAHDLGITCCSFSSQPLSGGEHGLQLYRLASCGQDCEIKLWV
                     VSFTRVLGFELKYRSTLSGHCAPVLACAFSHDGQMLASGSVDKSVIIYDIGTQSVLHT
                     LTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETPCQAGSVSDQLKHFIEDWSE
                     EDVSKWLRAQGLEDLVDIFRTNNIDGKELLHLTKESLAGDMKIESLGLRSKVLRSIDE
                     LRTRMESLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNL
                     ALPSLVLTPNRTLKMAINRWLETHQK"
     exon            603..787
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            788..880
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            881..974
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1008
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1049
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1156
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1336
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1477
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
     exon            1478..1943
                     /gene="Wdsub1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtgagcca gactctgccc agtgagctgc ccagcccggg gccgagcccg gggtagtcgt
       61 gcagccttcg tgacctcaga acccggcggt tcccgcgccg ggcaagcgtg acctcgaccg
      121 cggggaaccg taaggggagg agccgcccgg aggcgggact gtcagtccgg gtgcgaggga
      181 agctgtttac cttgcgtgag gaacatggtg aagctgattc acacactggc ggatcacggt
      241 gatgacgtca gctgctgcgc cttctcatcc acgctcctgg ccacctgctc cttggacaag
      301 accatccgcc tgtactccct aagtgacttt gctgaactgc cgcactcccc gttgaagttt
      361 cacacgtatg ccgtccactg ctgcagcttc tcgccgtcag gacacgtttt ggcgtcgtgc
      421 tcgacagacg gtactacggt actgtggagc gcgcacagcg gacacaccct gacggtgttg
      481 gagcagccgg gtggaagccc cgtgcgcgtt tgctgctttt cgccggactc cacctacctg
      541 gcatcagggg ctgccgatgg gtctgttgtt ttgtggaacg cacattcata caaattatat
      601 aggtgtggta gtgtcaagga cagctcattg gtggcctgtg cgttttctcc tgacggaggc
      661 ctccttgtca ctggctcctc gggaggggac ttgacagtgt gggatgacag aatgaggtgt
      721 ctgcacagcg agaaggcaca cgacctcggg atcacctgct gcagcttttc ctcacagcct
      781 ctctctggcg gagagcacgg ccttcagctt taccgattgg catcgtgtgg tcaagactgt
      841 gagatcaaac tctgggttgt ttcttttacc cgtgtcttag gctttgagtt aaaatataga
      901 agcacactaa gtgggcactg tgcccctgtt ctggcctgtg ccttttccca cgatggacag
      961 atgcttgcat cagggtcagt ggataagtct gtcatcatct atgatattgg aactcagagt
     1021 gtgctgcaca cgctgactca gcataccagg tacgtcacga cttgtgcgtt tgcacccaac
     1081 actctcttac ttgctactgg ttcgatggac aagacagtga acatttggca gtttgacctg
     1141 gaaacacctt gccaagcagg aagcgtaagc gatcagctga aacatttcat tgaggactgg
     1201 tcagaggagg atgtctcaaa atggcttcgt gctcaaggct tggaagacct cgttgatatt
     1261 ttccggacaa acaacatcga cgggaaagaa ctattgcacc tcacaaagga aagtctggct
     1321 ggtgatatga aaatcgagtc tctaggtctg cgcagcaaag tcctgcggag tattgatgag
     1381 ctcaggacca ggatggagtc cctttcttcc ggaatccctg acgagttcat ctgcccaata
     1441 accagggaac ttatgaagga ccccgtcatc gcatcagatg gctactccta cgagagagaa
     1501 gcaatggaga gttggatcca caagaagaag cgcacgagcc ccatgacaaa cttggctctt
     1561 ccttcactgg tactgacccc aaacaggact ctgaaaatgg ccatcaatcg atggctagag
     1621 acgcatcaga agtgaacctg cccacaggca tcgggtacac tgtcagtgat gcccttcaga
     1681 tgattcaaaa tgctaagcag ccattacaga agcaaataaa agggaaggac agacgttaaa
     1741 tccagttact tttaaaaact gtaaactgta agcaggtaag tggtggcgca cacctttaat
     1801 cccagcactc aggaggcaga ggcaggtggg tctccatgaa ttccaggcca gcctggtcta
     1861 tagggcgagt tccaggacgg caaggctaca cagagaaacc ctgtctcaaa aacctaaaag
     1921 caaaaaaaaa aaaaaaaaaa aaaaaa
//
